James Annan's Home Page

Contents

This page contains a brief introduction to my work and some recent publications. I can be emailed here (address weakly obscured).
 


My personal (non-work) homepage is mostly full of photos of Japan, and can be found here. I have a blog too.

 

Research in probabilistic climate prediction

I am a member of the Global Change Projection Research Programme at RIGC (formerly known as FRCGC). I'm mostly interested in the problem of parameter estimation and its specific relevance to climate prediction. Some of my work has been in collaboration with the UK-based GENIEproject, and the rest is mostly in collaboration with other reserachers here at RIGC, also with NIES and CCSR. There are now several researcher here working on related topics forming the JUMP group.

Motivation

Working Group 1 of the IPCC TAR identified the following as one of its "high priority areas for action":
"Improve methods to quantify uncertainties of climate projections and scenarios, including long-term ensemble simulations using complex models".

Efficient probabilistic parameter estimation is a key component of this, since it is model parameters that largely determine the long-term climate of a model (and so the uncertainty in parameter values also determines the uncertainty in model climate predictions). The climateprediction.net website has a lot of useful background information on this subject. However, I think they are too pessimistic about the possibility of using computationally efficient approaches to the problem.

Method

We have developed an efficient probabilistic multivariate parameter estimation scheme based on the ensemble Kalman filter (EnKF) and I think this can form the basis of a solution to the above problem. The basic idea is only a minor extension of a standard technique: augmenting the model state with parameter values means that the parameters are automatically included in the EnKF analysis scheme. The multivariate perturbations so generated are (linearly) balanced, and so the method thus avoids the wasteful integration of vast numbers of very poor models that generally occurs when parameter perturbations are selected using naive direct sampling methods. Although the Kalman filter equations are only provably optimal for linear systems, the EnKF has a good track record of providing effective solutions to nonlinear problems. Geir Evensen's page is a good place to look for more information on these.

Our implementation is based on an iterative scheme which improves accuracy in nonlinear situations with a wide prior. We have succesfully applied the technique to a range of models including the famous Lorenz model, a new computationally fast coupled atmosphere-ocean Earth system model (C-GOLDSTEIN), a simplified spectral primitive equation AGCM and most recently the state-of-the-art CCSR/NIES/FRCGC AGCM MIROC3.2 AGCM at T21L20 resolution coupled to a slab ocean.

Due to the balanced nature of the parameter perturbations generated, the method may be particularly valuable for coupled atmosphere-ocean models. The C-GOLDSTEIN model is probably too simple to be a meaningful test of this - it only has a diffusive 2D atmosphere - but we have also appplied the method successfully to the IGCM-GOLDSTEIN model (efficient spectral T21 AGCM coupled to GOLDSTEIN ocean), which resulted in an ensemble of models which ran without the need for flux adjustments. However, this model is still somewhat developmental and the overall results were not that great, so are not published. This sort of aproach should enable us to perform transient ensemble hindcast simulations tuned to historical data which I believe could significantly improve the quality and credibility of probabilistic climate forecasts.

The fly in the ointment

We think we have found a good solution to the practical and theoretical problems of multivariate parameter estimation in the perfect model world (unless the nonlinearity is truly extreme, in which case no efficient solution exists - but we have found no evidence for this). However, real applications are trickier, due to the problem of imperfectly characterised model error (the residual difference between model and data that cannot be eliminated, however carefully the model is tuned). One way of thinking about it is to ask, how do we assign numerical values to the relative likelihoods of different samples from the prior distribution? How much "better" is one model than another at predicting the future, when both are clearly imperfect?

Towards a solution?

Since there is a fundamentally subjective element in the estimation process (which will never be wholly eliminated), we think that it is essential to test any assumptions with out-of-sample data. For example, consider the forecast/validate cycle of numerical weather prediction, which has enabled calibration and refinement of those methods over several decades. The problem with taking a similar approach to climate forecasting is that we cannot wait for several 100 year forecast/validate cycles. Therefore, we look to the paleoclimate record for (in)validation opportunities. If our models cannnot hindcast different climates reasonably well, then we can have little confidence in their forecasts.

Our first experiments with the MIROC3.2 AGCM are described here. We consider a range of subjective assumptions concerning model error, and test the ability of our ensembles to hindcast the Last Glacial Maximum state.

Betting on Climate Change

I'm also interested in the use of prediction markets and ideas futures. Here's a page I wrote, based on a poster presentation I gave at the EGU in 2005. I've also had an article published on realclimate.org on the same topic. It's not clear yet where, if anywhere, it is going, but it's been interesting and instructive so far.

Publications (including a handful of non-peer-reviewed manuscripts)

2010

J. D. Annan, Bayesian approaches to detection and attribution, in press, Wiley Interdisciplinary Reviews: Climate Change

G. Foster, J. D. Annan, P. D. Jones, M. E. Mann, B. Mullan, J. Renwick, J. Salinger, G. A. Schmidt, and K. E. Trenberth, Comment on ¡ÈInfluence of the Southern Oscillation on tropospheric temperature¡É by J. D. McLean, C. R. de Freitas, and R. M. Carter. Sitting on the Editor's desk at JGR Atmospheres, reviewed and provisionally accepted months ago but still awaiting McLean's reply.

J. D. Annan and J. C. Hargreaves, Efficient identification of ocean thermodynamics in a physical/biogeochemical ocean model with an iterative Importance Sampling method, In press, Ocean Modelling.

J. D. Annan and J. C. Hargreaves, Reliability of the CMIP3 ensemble, Geophys. Res. Lett., 37, L02703, doi:10.1029/2009GL041994 (on-line)

2009

J. C. Hargreaves and J. D. Annan, The importance of paleoclimate modelling for improving predictions of future climate change, Clim. Past, 5,803-814 (on-line here)

T. Yokohata, M. J. Webb, M. Collins, K. D. Williams, M. Yoshimori, J. C. Hargreaves, J. D. Annan, Structural similarities and differences in climate responses to CO2 increase between two perturbed physics ensembles. In press, Journal of Climate.


M. Abe, H. Shiogama, J. C. Hargreaves, J. D. Annan, T. Nozawa and S. Emori, Correlation between Inter-model Similarities in Spatial Pattern for Present and Projected Future Mean Climate, SOLA, Vol.5, 133-136, doi:10.2151/sola.2009-034 (on-line)

J. D. Annan and J. C. Hargreaves, On the generation and interpretation of probabilistic estimates of climate sensitivity. Climatic Change DOI: 10.1007/s10584-009-9715-y (here it is).

J. C. Hargreaves and J. D. Annan, Comment on "Aerosol radiative forcing and climate sensitivity deduced from the Last Glacial Maximum to Holocene transition", by P. Chylek and U. Lohmann, Geophys. Res. Lett., 2008. Clim. Past, 5, 143-145, 2009 (on-line)

2008

G. Foster, J. D. Annan, G. A. Schmidt and M. E. Mann, Comment on `Heat capacity, time constant and sensitivity of Earth's climate system' by S. Schwartz Vol. 113, D15102, doi:10.1029/2007JD009373 (on-line here), with some blog coverage here and here.

2007

F. W. M. Brown, R. A. Pielke and J. D. Annan, Is there agreement amongst climate scientists on the IPCC AR4 WG1? Unpublished.

J. C. Hargreaves, A. Abe-Ouchi, J. D. Annan. Linking glacial and future climates through an ensemble of GCM simulations. Climate of the Past, 3, 77-87 (on-line).

A. Ridgwell, J. C. Hargreaves, N. R. Edwards, J. D. Annan, T. M. Lenton, R. Marsh, A. Yool, A. Watson. Marine geochemical data assimilation in an efficient Earth System Model of global biogeochemical cycling. Biogeosciences 4, 87-104 (their version).

J.D. Annan and J.C. Hargreaves, Efficient estimation and ensemble generation in climate modelling, Philosophical Transactions of the Royal Society A 365(1857). 2077-2088.

T. Lenton, Y. Aksenov, J.D. Annan, T. Cooper-Chadwick, S. Cox, N. Edwards, S. Goswami, J.C. Hargreaves, P. Harris, Z. Jiao, V. Livina, D. Lunt, R. Marsh, T. Payne, A. Price, A. Ridgwell, I. Rutt, J.G. Shepherd, P. Valdes, G. Williams, M. Williamson, A. Yool., A modular, scalable, Grid ENabled Integrated Earth system modelling (GENIE) framework: Effects of dynamical atmosphere and ocean resolution on bi-stability of the thermohaline circulation, Climate Dynamics DOI 10.1007/s00382-007-0254-9 (their version).

I. Andreu-Burillo, J. Holt, R. Proctor, J. D. Annan, I. D. James and D. Prandle. Assimilation of sea surface temperature in the POL Coastal Ocean Modelling System. Journal of Marine Systems 65, 1-4, 27-40 (their version).

S. L. Smith, B. E. Casareto, M. P. Niraula, Y. Suzuki, J. C. Hargreaves, J. D. Annan and Y. Yamanaka. Examining the regeneration of nitrogen by assimilating Data from Incubations into a Multi-Element Ecosystem Model. Journal of Marine Systems 64, 1-4, 135-152 (their version).

2006

J. D. Annan and J. C. Hargreaves. Can we believe in high climate sensitivity?, On the Arxiv - (NB not peer reviewed, or rather multiply peer-reviewed but not published in a peer-reviewed journal!) - now there's a published version, see 2009 list.

J. D. Annan and J. C. Hargreaves. Comment on "Constraining climate forecasts: The role of prior assumptions", Submitted to GRL. OK, they wouldn't publish this one....hence the above paper.

J. D. Annan and J. C. Hargreaves. Using multiple observationally-based constraints to estimate climate sensitivity, Geophys. Res. Lett., 33, L06704, doi:10.1029/2005GL025259 (their on-line version). My commentary on this paper.

J. C. Hargreaves and J. D. Annan. Using ensemble prediction methods to examine regional climate variation under global warming scenarios. Ocean Modelling Vol 11 Nos 1-2 p174-192 (their on-line version). This was Ocean Modelling's most downloaded article (for 9 months to Jan 2006, but no longer)!

2005

J. D. Annan, J. C. Hargreaves, R. Ohgaito, A. Abe-Ouchi, S. Emori. Efficiently constraining climate sensitivity with paleoclimate simulations. SOLA Vol 1 pages 181-184.

Just about everything else on this list is peer-reviewed, but I wanted to dump a bunch of posters presented at the EGU in Vienna onto my webspace: Estimating climate sensitivity with the ensemble Kalman filter, Ensemble based simulation of the last glacial maximum, and A market-based approach to climate prediction - this one has now been summarised in a web page here. All files are rather large pdfs, and in fact the first two are nearly identical - you have been warned!

J. D. Annan, D. J. Lunt, J. C. Hargreaves and P. J. Valdes. Parameter estimation in an atmospheric GCM using the Ensemble Kalman Filter. Nonlinear Processes in Geophysics 12 (3), pages 363-371 (their on-line version).

J. D. Annan. Parameter estimation using chaotic time series. Tellus A Vol 57 No 5 pp 709-714.

J. D. Annan, J. C. Hargreaves, N. R. Edwards and R. Marsh. Parameter estimation in an intermediate complexity Earth System Model using an ensemble Kalman filter. Ocean Modelling, Volume 8, Issues 1-2, Pages 135-154. (On-line version for subscribers - which is OM's 5th most downloaded article, April 2004-March 2005)

2004

J. D. Annan. Fundamental error in "Trends in serious head injuries..." Cook and Sheikh 2003. Injury Prevention Online. (Not related to my real job!)

J. C. Hargreaves, J. D. Annan, N. R. Edwards and R. Marsh. Climate forecasting using an intermediate complexity Earth System Model and the Ensemble Kalman Filter.  Climate Dynamics Vol 23 Nos 7-8, pp 745-760, DOI: 10.1007/s00382-004-0471-4.

J. D. Annan and J. C. Hargreaves. Efficient parameter estimation for a highly chaotic system. Tellus A, Vol 56 No 5, Pages 520-526 (On-line version).

J. D. Annan. On the orthogonality of Bred Vectors. Monthly Weather Review, Vol 132, No 3, pp 843-849.

2003

C. Huntingford, J. C. Hargreaves, T. M. Lenton and J. D. Annan. Extent of partial ice cover due to carbon cycle feedback in a zonal energy balance model. Hydrology and Earth System Science 7, pp213-219.

2002

J. C. Hargreaves and J. D. Annan. Assimilation of paleo-data in a simple Earth system model. Climate Dynamics Vol 19 Nos 5-6, pp371-381.

2001

J. K. Hargreaves, A. Ranta, J. D. Annan and J. C. Hargreaves,  The temporal fine structure of night-time spike events in auroral radio absorption, studied by a wavelet method. Journal of Geophysical Research, 106(A11):24621--24636.

J. D. Annan. Hindcasting coastal sea levels in Morecambe Bay. Estuarine, Coastal and Shelf Science Vol 53 Issue 4, pp459-466.

J. D. Annan. Modelling under uncertainty: Monte Carlo methods for temporally varying parameters. Ecological Modelling, 136(2--3):297--302.

2000

F. Chen and J. D. Annan. The influence of different turbulence closure schemes on modelling primary production in a 1D coupled physical-biological model. Journal of Marine Systems 26:259--288.

J. C. Hargreaves and J. D. Annan. Comments on ``Improvement of the Short-Fetch Behaviour in the Wave Ocean Model (WAM)''. Journal of Atmospheric and Oceanic Technology, 18(4):711--715.


1999

J. D. Annan. Reply to ``Comments on the paper: On repeated parameter sampling in Monte Carlo simulations''. Ecological Modelling 124:255--257.

J. C. Hargreaves and J. D. Annan. The impact of fierce weather on lazy modelling. In The wind-driven air-sea interface, M. Banner (Editor), ADFA Document Production Centre, Canberra, Australia, 125--132.

J. D. Annan and J. C. Hargreaves. Sea surface temperature assimilation for a three-dimensional baroclinic model of shelf seas. Continental Shelf Research, 19:1507--1520.

J. D. Annan. Numerical methods for the solution of the turbulence energy equations in shelf seas. International Journal for Numerical Methods in Fluids, 29:193--206.

1997

J. D. Annan.  On repeated parameter sampling in Monte Carlo simulations. Ecological Modelling 97(1--2):111--115.

1996

J. C. Hargreaves, G. Gilmore and J. D. Annan. The influence of binary stars on Dwarf Spheroidal Galaxy kinematics. Monthly Notices of the Royal Astronomical Society 279(1):108--120.

1995

J. D. Annan. The complexities of the coefficients of the Tutte polynomial. Discrete Applied Maths 57:93-103.

1994

J. D. Annan. An approximation algorithm for counting the number of forests in dense graphs. Combinatorics, Probability and Computing 3:273-283.

J. D. Annan. The complexity of counting problems. D. Phil. Thesis, University of Oxford.