- Research Institute for Global Change
- Institute for Research on Earth Evolution (IFREE)
- Institute of Biogeosciences
- Marine Technology Center (MARITEC)
- Center for Deep Earth Exploration (CDEX)
- Earth Simulator Center (ESC)
- Marine-Earth Data and Information Department
- Mutsu Institute for Oceanography (MIO)
- Kochi Institute for Core Sample Research (KOCHI)
- Precambrian Ecosystem Laboratory
- Complex Earth System Modeling Laboratory
- Google Earth as Geoscience Data Browser Project
