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研究業績

査読有り（JAMSTECでの成果）

Taku Omura, Noriyuki Isobe, Takamasa Miura, Shun’ichi Ishii, Mihoko Mori, Yoshiyuki Ishitani, Satoshi Kimura, Kohei Hidaka, Katsuya Komiyama, Miwa Suzuki, Ken-ichi Kasuya, Hidetaka Nomaki, Ryota Nakajima, Masashi Tsuchiya, Shinsuke Kawagucci, Hiroyuki Mori, Atsuyoshi Nakayama, Masao Kunioka, Kei Kamino & Tadahisa Iwata. Microbial decomposition of biodegradable plastics on the deep-sea floor. Nature Communications, 2024, 15, doi: 10.1038/s41467-023-44368-8
Eri Kumagawa, Madoka Katsumata, Hiroshi Nishimura, Takashi Watanabe, Shun'ichi Ishii, Yukari Ohta. The etherase system of Novosphingobium sp. MBES04 functions as a sensor of lignin fragments through phenylpropanone production to induce specific transcriptional responses. Environmental Microbiology Reports, 2023, 16, 1, doi: 10.1111/1758-2229.13210
Yurika Ujiie, Yoshiyuki Ishitani, Yukiko Nagai, Yoshihiro Takaki, Takashi Toyofuku, Shun’ichi Ishii. Unique evolution of foraminiferal calcification to survive global changes. Science Advances, 2023, 9, 25, doi: 10.1126/sciadv.add3584
McDaniel Elizabeth A., Aljoscha Wahl Sebastian, ISHII SHUNICHI, Pinto Ameet, Ziels Ryan, Nielsen Per Halkjar, McMahon Katherine D., Williams Rohan B.H.. Prospects for multi-omics in the microbial ecology of water engineering. WATER RESEARCH, 2021, 205, doi: 10.1016/j.watres.2021.117608
Li Xie, Naoko Yoshida, Shunichi Ishii, Lingyu Meng. Isolation and Polyphasic Characterization of Desulfuromonas versatilis sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture. Microorganisms, 2021, 9, 9, doi: 10.3390/microorganisms9091953
Lina J. Bird, J. Gijs Kuenen, Magdalena R. Osburn, Naotaka Tomioka, Shun’ichi Ishii, Casey Barr, Kenneth H. Nealson, Shino Suzuki. Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71, 8, doi: 10.1099/ijsem.0.004945
Bird L. J, Kuenen J. G, Osburn M. R, Tomioka N, Ishii S, Barr C, Nealson K. H, Suzuki S. Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71, 8, p. 004945-004945, doi: 10.1099/ijsem.0.004945
Urai A., Takano Y., Imachi H., Ishii S., Matsui Y., Ogawara M., Tasumi E., Miyairi Y., Ogawa N.O., Yoshimura T., Inagaki F., Yokoyama Y., Kawano K., Murai D., Park H.-D., Ohkouchi N.. Origin of deep methane associated with a unique community of microorganisms in an organic- and iodine-rich aquifer. ACS Earth and Space Chemistry, 2021, 5, 1, p. 1-11, doi: 10.1021/acsearthspacechem.0c00204
Atsushi Urai, Yoshinori Takano, Hiroyuki Imachi, Shun’ichi Ishii, Yohei Matsui, Miyuki Ogawara, Eiji Tasumi, Yosuke Miyairi, Nanako O. Ogawa, Toshihiro Yoshimura, Fumio Inagaki, Yusuke Yokoyama, Kenjiro Kawano, Daisuke Murai, Ho-Dong Park, and Naohiko Ohkouchi. Origin of deep methane associated with a unique community of microorganisms in an organic- and Iodine-rich aquifer. ACS Earth and Space Chemistry, 2021, 5, 1, p. 1-11, doi: 10.1021/acsearthspacechem.0c00204
Shunichi Ishii, Hiroyuki Imachi, Kenjiro Kawano, Daisuke Murai, Miyuki Ogawara, Katsuyuki UEMATSU, Kenneth H Nealson, Fumio Inagaki. Bioelectrochemical stimulation of electromethanogenesis at a seawater-based subsurface aquifer in a natural gas field. Frontiers in Energy Research, 2019, 6, doi: 10.3389/fenrg.2018.00144
Shino Suzuki, Kenneth H. Nealson, Shun'ichi Ishii. Genomic and in-situ Transcriptomic Characterization of the Candidate Phylum NPL-UPL2 From Highly Alkaline Highly Reducing Serpentinized Groundwater. Frontiers in Microbiology, 2018, 9, doi: 10.3389/fmicb.2018.03141
Shun’ichi Ishii, Shino Suzuki, Aaron Tenney, Kenneth H Nealson, Orianna Bretschger. Comparative metatranscriptomics reveals extracellular electron transfer pathways conferring microbial adaptivity to surface redox potential changes. ISME Journal, 2018, 12, p. 2844-2863, doi: 10.1038/s41396-018-0238-2
Kouzuma, A., Ishii, S., Watanabe, K.. Metagenomic insights into the ecology and physiology of microbes in bioelectrochemical systems. BIORESOURCE TECHNOLOGY, 2018, 255, p. 302-307, doi: 10.1016/j.biortech.2018.01.125
稲垣史生, 諸野祐樹, 星野辰彦, 井尻暁, 肖楠, 鈴木志野, 石井俊一, 浦本豪一郎, 寺田武志, 井町寛之, 久保雄介. 海底下深部生命圏フロンティアの探究と将来展望. 地質学雑誌, 2018, 124, 1, p. 77-92, doi: 10.5575/geosoc.2017.0079
Shino Suzuki, Shun'ichi Ishii, Tatsuhiko Hoshino, Amanda Rietze, Aaron Tenney, Penny L. Morrill, Fumio Inagaki, J. Gijs Kuenen, Kenneth H. Nealson. Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars. ISME Journal, 2017, 11, p. 2584-2598, doi: 10.1038/ismej.2017.111
Ishii, S., Suzuki, S., Yamanaka, Y., Wu, A., Nealson, K. H., Bretschger, O.. Population dynamics of electrogenic microbial communities in microbial fuel cells started with three different inoculum sources. BIOELECTROCHEMISTRY, 2017, 117, p. 74-82, doi: doi: 10.1016/j.bioelechem.2017.06.003
Kouzuma, A., Tsutsumi, M., Ishii, S., Ueno, Y., Abe, T., Watanabe, K.. Non-autotrophic methanogens dominate in anaerobic digesters. Scientific Reports, 2017, 7, doi: doi:10.1038/s41598-017-01752-x
Sofia Babanova, Kayla Carpenter, Sujal Phadke, Shino Suzuki, Shun'ichi Ishii, Tony Phan, Elysse Grossi-Soyster, Michael Flynn, John Hogan, Orianna Bretschger. The effect of membrane type on the performance of microbial electrosynthesis cells for methane production. Journal of The Electrochemical Society, 2016, 164, 3, p. H3015-H3023, doi: doi: 10.1149/2.0051703jes
Shun’ichi Ishii, Shino Suzuki, Aaron Tenney, Trina M. Norden-Krichmar, Kenneth H. Nealson & Orianna Bretschger. Microbial metabolic networks in a complex electrogenic biofilm recovered from a stimulus-induced metatranscriptomics approach. Scientific Reports, 2015, 5, doi: 10.1038/srep14840
Orianna Bretschger, Kayla Carpenter, Tony Phan, Shino Suzuki, Shun’ichi Ishii, Elysse Grossi-Soyster, Michael Flynn, John Hogan. Functional and taxonomic dynamics of an electricity-consuming methane-producing microbial community. Bioresource technology, 2015, 195, p. 254-264, doi: doi:10.1016/j.biortech.2015.06.129
Orianna Bretschger, Kayla Carpenter, Tony Phan, Shino Suzuki, Shun’ichi Ishii, Elysse Grossi-Soyster, Michael Flynn, John Hogan. Functional and taxonomic dynamics of an electricity-consuming methane-producing microbial community. Bioresource Technology, 2015, 195, p. 254-264, doi: doi:10.1016/j.biortech.2015.06.129