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Infectious Disease Prediction

  • What is “Infectious Disease Prediction” project?
  • Project Image
  • Value-Added-Information Generation
  • Role of NAMR
  • Role of 4DVE

What is
“Infectious Disease Prediction” project?

Based on seasonal climate prediction information, observation data, and malaria incidence data, we predict malaria incidence in South Africa for the next nine months using machine learning models. In the future, we plan to expand our prediction to longer periods of time, to other regions, and to other infectious diseases.

・APL Virtualearth
・Malaria prediction using Machine learning models

Project Image

  • ES4 ES4ES4The Earth SimulatorThe Earth Simulator (ES4) is a multi-architecture supercomputer based on AMD EPYC CPUs, combined with accelerators (NEC SX-Aurora TSUBASA and NVIDIA GPU A100).
  • DA DADASuper Computer System DA (Data Analyzer system) is a supercomputer system equipped with Intel processors with high performance and high reliability.
  • DIAS DIASDIASData Integration
    and Analysis System
    The data obtained from observations in each region is collected, analyzed, and converted into useful information for crisis management against threats such as global environmental problems and large-scale natural disasters.
  • NAMR Numerical Analysis Method Repository NAMR is Numerical Analysis Method Repository. (Numerical analysis methods: artificial intelligence, sparse modeling, finite element method, particle method, verification method) Role of NAMR
  • 4DVE 4DVE develops and maintains a system that allows users to map variety of analysis data including time fluctuations, and seamlessly combine and extract information. It is called the 4th Dimensional Virtual Earth. Role of 4DVE
  • VAi VAi(Value-Added-Information Generation)VAi aims to contribute to the resolution of policy issues and the development of a sustainable socio-economic system by creating and disseminating information that meets various needs. VAi Details

VAi(Value-Added-Information Generation)

VAi aims to contribute to the resolution of policy issues and the development of a sustainable socio-economic system by creating and disseminating information that meets various needs.

  • The infectious disease predictions are generated using the malaria prediction model, based on the dynamically downscaled SINTEX-F climate predictions, and malaria incidence data, are provided to the iDEWS bureau (South African epidemic disease laboratory, weather service, and provincial health officials). We plan to expand to other regions and other infectious diseases such as Mozambique, Kenya, Ghana, India, Bangladesh, etc. in the future.

Role of NAMR

NAMR is Numerical Analysis Method Repository. (Numerical analysis methods: artificial intelligence, sparse modeling, finite element method, particle method, verification method)

  • SINTEX-F seasonal prediction system
    The ocean-atmosphere coupled model provides climate prediction for several seasons to two years into the future.
  • Climatic downscaling system
    Climate prediction data is refined by the regional atmospheric model, the Weather Research and Forecasting (WRF) system.
    Ocean SST (sea surface temperature) fronts (blue), estimated distribution of Skipjack tuna (gray), and actual fishing points (red) around Japan Island.

    Climatic downscaling system

  • Automatic fishing point detection from AIS position data
    Tool for fishing point detection derived from AIS position data of fishing vessels
  • Virtual fish farming cage
    High-performance estimation by integration of numerical model that reproduces fish farming cage and echo data of fish finder
    Reproduction of yellowtail distribution by virtual fish farming cage (upper) and the corresponding fish finder echo simulation (lower).

    Reproduction of yellowtail distribution by virtual fish farming cage (upper) and the corresponding fish finder echo simulation (lower)

Role of 4DVE

4DVE develops and maintains a system that allows users to map variety of analysis data including time fluctuations, and seamlessly combine and extract information. It is called the 4th Dimensional Virtual Earth.

  • FORA(Four-dimensional Variational Ocean ReAnalysis for the Western North Pacific)
    Daily ocean environment product at 10km resolution.

    ・FORA(Four-dimensional Variational Ocean ReAnalysis for the Western North Pacific)
  • FORP
    Future prediction data set of ocean environments using atmospheric data from multiple climate models of CMIP5 as an external forcing, with a 10-km grid for the North Pacific and a 2-km grid for the sea around Japan.

    ・FORP(Future Ocean Regional Projection dataset for coastal applications in Japan)
    ・FORP(Future Ocean Regional Projection dataset for the Western North Pacific)
    Changes in sea surface temperature from the present climate in the waters near Japan by FORP

    Changes in sea surface temperature from the present climate in the waters near Japan by FORP

  • Lower trophic level model products for marine ecosystem
    A prediction data set of lower-trophic level marine ecosystems (zooplankton, etc.) by coupling online with FORA and FORP ocean models
  • Estimation of marine species distribution
    Species distribution data estimated/predicted by applying ocean environment data to potential fishing ground estimation model
  • Biomass estimation
    Estimated growth and amount data of target fishes by using virtual fish farming cage