JAMSTEC > JAMSTEC Researchers Database > Tatsuhiko Hoshino

JAMSTEC Researchers Database

  • Tatsuhiko Hoshino
Department
Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star)　Kochi Institute for Core Sample Research (KOCHI)　Geomaterials Science Research Group
Other
Advanced Institute for Marine Ecosystem Change　Research Division　Marine Microbial Ecology Research Unit　Unit Leader
Career
Senior Researcher

Profile

Speciality

Research Achievement

Peer reviewed publications (Belonging to JAMSTEC)

  • Akinori Yabuki, Tatsuhiko Hoshino, Tamiko Nakamura, Keiko Mizuno. The copy number of the eukaryotic rRNA gene can be counted comprehensively. MicrobiologyOpen, 2024, 13, 2, doi: 10.1002/mbo3.1399
  • Jitsuno K, Hoshino T, Nishikawa Y, Kogawa M, Mineta K, Strasser M, Ikehara K, Everest J, Maeda L, Inagaki F, Takeyama H, IODP Expedition 386 Scientists (K.- H., Hsiung, T. Kanamatsu).. Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere. mSphere, 2024, 9, e00337-23, doi: 10.1128/msphere.00337-23
  • Akira Ijiri, Ryoma Setoguchi, Yuki Mitsutome, Tomohiro Toki, Masafumi Murayama, Kyoko Hagino, Yohei Hamada, Takeyasu Yamagata, Hiroyuki Matsuzaki, Wataru Tanikawa, Osamu Tadai, Kazuya Kitada, Tatsuhiko Hoshino, Takuro Noguchi, Juichiro Ashi, Fumio Inagaki. Origins of sediments and fluids in submarine mud volcanoes off Tanegashima Island, northern Ryukyu Trench, Japan. Frontiers in Earth Science, 2023, 11, doi: 10.3389/feart.2023.1206810
  • Morgan S Sobol, Tatsuhiko Hoshino, Victor Delgado, Taiki Futagami, Chihiro Kadooka, Fumio Inagaki, Brandi Kiel Reese. Genome characterization of two novel deep-sea sediment fungi, Penicillium pacificagyrus sp. nov. and Penicillium pacificasedimenti sp. nov., from South Pacific Gyre subseafloor sediments, highlights survivability. BMC GENOMICS, 2023, 24, 249, doi: 10.1186/s12864-023-09320-6
  • Ruth L. Schmidt, Tatsuhiko Hoshino, Yuki Morono, Julien Tremblay, Dana Ulanova. Terpene Synthase Gene Amplicons from Subseafloor Sediment. Microbiology Resource Announcements, 2023, 12, 2, p. e1037-22, doi: 10.1128/mra.01037-22
  • 谷川亘、村山雅史、井尻暁、 廣瀬丈洋、 浦本豪一郎、 星野辰彦、 田中幸記、 山本裕二、 濱田洋平、 岡崎啓史、 徳山英一. 南海地震水没災害伝承の痕跡発掘に向けた沿岸域海底調査：須崎市野見湾を例に. 沿岸海洋研究, 2021, 59, 1, p. 21-31, doi: 10.32142/engankaiyo.2021.4.001
  • Tatsuhiko Hoshino, Ryohei Nakao, Hideyuki Doi, Toshifumi Minamoto. Simultaneous absolute quantification and sequencing of fish environmental DNA in a mesocosm by quantitative equencing technique. Scientific Reports, 2021, 11, 1, p. 1-9, doi: 10.1038/s41598-021-83318-6
  • Shoichi Kiyokawa, Takashi Kuratomi, Tatsuhiko Hoshino, Shusaku Goto, Minoru Ikehara. Hydrothermal formation of iron-oxyhydroxide chimney mounds in a shallow semi-enclosed bay at Satsuma Iwo-Jima Island, Kagoshima, Japan. GEOLOGICAL SOCIETY OF AMERICA BULLETIN, 2021, doi: 10.1130/B35782.1
  • Verena B. Heuer, Fumio Inagaki, Yuki Morono, Yusuke Kubo, Arthur J. Spivack, Bernhard Viehweger, Tina Treude, Felix Beulig, Florence Schubotz, Satoshi Tonai, Stephen A. Bowden, Margaret Cramm, Susann Henkel, Takehiro Hirose, Kira Homola, Tatsuhiko Hoshino, Akira Ijiri, Hiroyuki Imachi, Nana Kamiya, Masanori Kaneko, Lorenzo Lagostina, Hayley Manners, Harry-Luke McClelland, Kyle Metcalfe, Natsumi Okutsu, Donald Pan, Maija J. Raudsepp, Justine Sauvage, Man-Yin Tsang, David T. Wang, Emily Whitaker, Yuzuru Yamamoto, Kiho Yang, Lena Maeda, Rishi R. Adhikari, Clemens Glombitza, Yohei Hamada, Jens Kallmeyer, Jenny Wendt, Lars Wörmer, Yasuhiro Yamada, Masataka Kinoshita, Kai-Uwe Hinrichs. Temperature limits to deep subseafloor life in the Nankai Trough subduction zone. SCIENCE, 2020, 370, 6521, p. 1230-1234, doi: 10.1126/science.abd7934
  • Takuya Itaki, Yosuke Taira, Naoki Kuwamori, Hitoshi Saito, Minoru Ikehara, Tatsuhiko Hoshino. Innovative microfossil (radiolarian) analysis using a system for automated image collection and AI-based classification of species. Scientific Reports, 2020, 10, 1, p. 1-9, doi: 10.1038/s41598-020-77812-6
  • Tatsuhiko Hoshino, Hideyuki Doi, Go-Ichiro Uramoto, Lars Wörmer, Rishi R Adhikari, Nan Xiao, Yuki Morono, Steven D’Hondt, Kai-Uwe Hinrichs, Fumio Inagaki. Global diversity of microbial communities in marine sediment. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117, 44, p. 27587-27597, doi: 10.1073/pnas.1919139117
  • Yuki Morono, Motoo Ito, Tatsuhiko Hoshino, Takeshi Terada, Tomoyuki Hori, Minoru Ikehara, Steven D’Hondt & Fumio Inagaki. Aerobic microbial life persists in oxic marine sediment as old as 101.5 million years. Nature Communications, 2020, 11, doi: 10.1038/s41467-020-17330-1
  • Yohey Suzuki, Seiya Yamashita, Mariko Kouduka, Yutaro Ao, Hiroki Mukai, Satoshi Mitsunobu, Hiroyuki Kagi, Steven D’Hondt, Fumio Inagaki, Yuki Morono, Tatsuhiko Hoshino, Naotaka Tomioka, Motoo Ito. Deep microbial proliferation at the basalt interface in 33.5-104 million-year-old oceanic crust. Communications Biology, 2020, 3, doi: 10.1038/s42003-020-0860-1
  • Yohey Suzuki, Seiya Yamashita, Mariko Kouduka, Yutaro Ao, Hiroki Mukai, Satoshi Mitsunobu, Hiroyuki Kagi, Steven D'Hondt, Fumio Inagaki, Yuki Morono, Tatsuhiko Hoshino, Naotaka Tomioka, Motoo Ito. Deep microbial proliferation at the basalt interface in 33.5-104 million-year-old oceanic crust. Communications Biology, 2020, 3, p. 1-9, doi: 10.1038/s42003-020-0860-1
  • Yuki Morono, Jessie Wishart, Motoo Ito, Akira Ijiri, Tatsuhiko Hoshino, Marta Torres, Circe Verba, Takeshi Terada, Fumio Inagaki Frederick Colwell. Microbial Metabolism and Community Dynamics in Hydraulic Fracturing Fluids Recovered from Deep Hydrocarbon-Rich Shale. Frontiers in Microbiology, 2019, 10, doi: 10.3389/fmicb.2019.00376
  • Lars Wormer, Tatsuhiko Hoshino, Marshall W. Bowles, Bernhard Viehweger, Rishi R. Adhikari, Nan Xiao, Go-ichiro Uramoto, Martin Konneke, Cassandre S. Lazar, Yuki Morono, Fumio Inagaki, Kai-Uwe Hinrichs. Microbial dormancy in the marine subsurface: Global endospore abundance and response to burial. Science Advances, 2019, 5, 2, doi: 10.1126/sciadv.aav1024
  • Hiroyuki Imachi, Eiji Tasumi, Yoshihiro Takaki, Tatsuhiko Hoshino, Florence Schubotz, Shuchai Gan, Tzu-Hsuan Tu, Yumi Saito, Yuko Yamanaka, Akira Ijiri, Yohei Matsui, Masayuki Miyazaki, Yuki Morono, Ken Takai, Kai-Uwe Hinrichs, Fumio Inagaki. Cultivable microbial community in 2-km-deep, 20-million-year-old subseafloor coalbeds through ~1000 days anaerobic bioreactor cultivation. Scientific Reports, 2019, 9, doi: 10.1038/s41598-019-38754-w
  • Morgan S. Sobol, Tatsuhiko Hoshino, Taiki Futagami, Fumio Inagaki, Brandi Kiel Reese. Draft Genome Sequences of Penicillium spp. from Deeply Buried Oligotrophic Marine Sediments. Microbiology Resource Announcements, 2019, 8, 6, p. e01613-e01618, doi: 10.1128/MRA.01613-18
  • Yohei Hamada, Takehiro Hirose, Akira Ijiri, Yasuhiro Yamada, Yoshinori Sanada, Saneatsu Saito, Noriaki Sakurai, Takamitsu Sugihara, Takahiro Yokoyama, Tomokazu Saruhashi, Tatsuhiko Hoshino, Nana Kamiya, Stephen Bowden, Margaret Cramm, Susann Henkel, Kira Homola, Hiroyuki Imachi, Masanori Kaneko, Lorenzo Lagostina, Hayley Manners, Harry-Luke McClelland, Kyle Metcalfe, Natsumi Okutsu, Donald Pan, Maija Jocelyn Raudsepp, Justine Sauvage, Florence Schubotz, Arthur Spivack, Satoshi Tonai, Tina Treude, Man-Yin Tsang, Bernhard Viehweger, David T. Wang, Emily Whitaker, Yuzuru Yamamoto, Kiho Yang, Masataka Kinoshita, Lena Maeda, Yusuke Kubo, Yuki Morono, Fumio Inagaki and Verena B. Heuer. In-situ mechanical weakness of subducting sediments beneath a plate boundary decollement in the Nankai Trough. Progress in Earth and Planetary Science, 2018, 5, doi: 10.1186/s40645-018-0228-z
  • Myriam Kars, Robert J. Musgrave, Tatsuhiko Hoshino, Ann‐Sophie Jonas, Thorsten Bauersachs, Fumio Inagaki, Kazuto Kodama. Magnetic Mineral Diagenesis in a High Temperature and Deep Methanic Zone in Izu Rear Arc Marine Sediments, Northwest Pacific Ocean. JOURNAL OF GEOPHYSICAL RESEARCH - Solid Earth, 2018, 123, 10, p. 8331-8348, doi: 10.1029/2018JB015861
  • Tatsuhiko Hoshino, Fumio Inagaki. Abundance and distribution of Archaea in the subseafloor sedimentary biosphere. ISME Journal, 2018, 13, p. 227-231, doi: 10.1038/s41396-018-0253-3
  • Yuki Morono, Tatsuhiko Hoshino, Takeshi Terada, Taketo Suzuki, Takahiro Sato, Hisashi Yuasa, Yuji Kubota, Fumio Inagaki. Assessment of Capacity to Capture DNA Aerosols by Clean Filters for Molecular Biology Experiments. MICROBES AND ENVIRONMENTS, 2018, 33, 2, p. 222-226, doi: 10.1264/jsme2.ME18012
  • Akira Ijiri, Fumio Inagaki, Yusuke Kubo, Rishi R. Adhikari, Shohei Hattori,Tatsuhiko Hoshino, Hiroyuki Imachi, Shinsuke Kawagucci, Yuki Morono, Yoko Ohtomo, Shuhei Ono, Sanae Sakai, Ken Takai, Tomohiro Toki, David T. Wang, Marcos Y. Yoshinaga, Gail L. Arnold, Juichiro Ashi, David H. Case, Tomas Feseker, Kai-Uwe Hinrichs, Yojiro Ikegawa, Minoru Ikehara, Jens Kallmeyer, Hidenori Kumagai, Mark A. Lever, Sumito Morita, Ko-ichi Nakamura, Yuki Nakamura, Manabu Nishizawa, Victoria J. Orphan, Hans Roy, Frauke Schmidt, Atsushi Tani, Wataru Tanikawa, Takeshi Terada, Hitoshi Tomaru, Takeshi Tsuji, Urumu Tsunogai, Yasuhiko T. Yamaguchi, Naohiro Yoshida. Deep-biosphere methane production stimulated by geofluids in the Nankai accretionary complex. Science Advances, 2018, 4, 6, doi: 10.1126/sciadv.aao4631
  • Akira Ijiri, Fumio Inagaki, Yusuke Kubo, Rishi R Adhikari, Shohei Hattori, Tatsuhiko Hoshino, Hiroyuki Imachi, Shinsuke Kawagucci, Yuki Morono, Yoko Ohtomo, Shuhei Ono, Sanae Sakai, Ken Takai, Tomohiro Toki, David T Wang, Marcos Y Yoshinaga, Gail L Arnold, Juichiro Ashi, David H Case, Tomas Feseker, Kai-Uwe Hinrichs, Yojiro Ikegawa, Minoru Ikehara, Jens Kallmeyer, Hidenori Kumagai, Mark A Lever, Sumito Morita, Ko-ichi Nakamura, Yuki Nakamura, Manabu Nishizawa, Victoria J Orphan, Hans Røy, Frauke Schmidt, Atsushi Tani, Wataru Tanikawa, Takeshi Terada, Hitoshi Tomaru, Takeshi Tsuji, Urumu Tsunogai, Yasuhiko T Yamaguchi, Naohiro Yoshida. Deep-biosphere methane production stimulated by geofluids in the Nankai accretionary complex. Science Advances, 2018, 4, 6, doi: 10.1126/sciadv.aao4631
  • Tazro Ohta,Takeshi Kawashima,Natsuko O. Shinozaki, Akito Dobashi, Satoshi Hiraoka, Tatsuhiko Hoshino, Keiichi Kanno, Takafumi Kataoka, Shuichi Kawashima, Motomu Matsui, Wataru Nemoto, Suguru Nishijima, Natsuki Suganuma, Haruo Suzuki, Y‐h. Taguchi, Yoichi Takenaka, Yosuke Tanigawa, Momoka Tsuneyoshi, Kazutoshi Yoshitake, Yukuto Sato, Riu Yamashita, Kazuharu Arakawa, Wataru Iwasaki. Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis ‘Somei-yoshino’ across the Japanese archipelago. JOURNAL OF PLANT RESEARCH, 2018, doi: 10.1007/s10265-018-1017-x
  • 稲垣史生, 諸野祐樹, 星野辰彦, 井尻暁, 肖楠, 鈴木志野, 石井俊一, 浦本豪一郎, 寺田武志, 井町寛之, 久保雄介. 海底下深部生命圏フロンティアの探究と将来展望. 地質学雑誌, 2018, 124, 1, p. 77-92, doi: 10.5575/geosoc.2017.0079
  • Elizabeth Trembath-Reichert, Yuki Morono, Akira Ijiri, Tatsuhiko Hoshino, Katherine S. Dawson, Fumio Inagaki and Victoria J. Orphan. Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114, 44, p. E9206-E9215, doi: 10.1073/pnas.1707525114
  • Tatsuhiko Hoshino, Yohei Hamada. Estimation of the influence of sequencing errors and distribution of random-sequence tags on quantitative sequencing. JOURNAL OF BIOSCIENCE AND BIOENGINEERING, 2017, 124, 3, p. 359-364, doi: 10.1016/j.jbiosc.2017.04.003
  • Shino Suzuki, Shun'ichi Ishii, Tatsuhiko Hoshino, Amanda Rietze, Aaron Tenney, Penny L. Morrill, Fumio Inagaki, J. Gijs Kuenen, Kenneth H. Nealson. Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars. ISME Journal, 2017, 11, p. 2584-2598, doi: 10.1038/ismej.2017.111
  • Tatsuhiko Hoshino, Tomohiro Toki, Akira Ijiri, Yuki Morono, Hideaki Machiyama, Juichiro Ashi, Kei Okamura, Fumio Inagaki. Atribacteria from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes. Frontiers in Microbiology, 2017, 8, doi: 10.3389/fmicb.2017.01135
  • Tatsuhiko Hoshino and Fumio Inagaki. Distribution of anaerobic carbon monoxide dehydrogenase genes in deep subseafloor sediments. LETTERS IN APPLIED MICROBIOLOGY, 2017, 64, 5, p. 353-363
  • Tatsuhiko Hoshino, Fumio Inagaki. Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes. PLOS ONE, 2017, 12, 1, p. e0169431, doi: 10.1371/journal.pone.0169431
  • Hoshino Tatsuhiko, Inagaki Fumio. Application of stochastic labeling with random-sequence barcodes for simultaneous quantification and sequencing of environmental 16S rRNA genes.. PLoS ONE, 2017, 12, 1, doi: 10.1371/journal.pone.0169431
  • Fumito Shiraishi, Satoshi Mitsunobu, Katsuhiko Suzuki, Tatsuhiko Hoshino, Yuki Morono, Fumio Inagaki. Dense microbial community on a ferromanganese nodule from the ultra-oligotrophic South Pacific Gyre: Implications for biogeochemical cycles. Earth Planet. Sci. Lett., 2016, 447, p. 10-20, doi: 10.1016/j.epsl.2016.04.021
  • HOSHINO TATSUHIKO, Kuratomi Takashi , MORONO YUKI, Hori Tomoyuki, Oiwane Hisashi, Kiyokawa Shoichi, INAGAKI FUMIO. Ecophysiology of Zetaproteobacteria Associated with Shallow Hydrothermal Iron-Oxyhydroxide Deposits in Nagahama Bay of Satsuma Iwo-Jima, Japan. Frontiers in Microbiology, 2016, 6, doi: 10.3389/fmicb.2015.01554
  • Fumio Inagaki, Kai-Uwe Hinrichs, Yusuke Kubo, Marshall W. Bowles, Verena B. Heuer, Wei-Li Hong,Tatsuhiko Hoshino, Akira Ijiri, Hiroyuki Imachi, Motoo Ito, Masanori Kaneko, Mark A. Lever, Yu-Shih Lin, Barbara A. Methe, Sumito Morita, Yuki Morono, Wataru Tanikawa, Monika Bihan, Stephen A. Bowden, Marcus Elvert, Clemens Glombitza, Doris Gross, Guy J. Harrington, Tomoyuki Hori, Kelvin Li, David Limmer, Chang-Hong Liu, Masafumi Murayama, Naohiko Ohkouchi, Shuhei Ono, Young-Soo Park, Stephen C. Phillips, Xavier Prieto-Mollar, Marcella Purkey, Natascha Riedinger, Yoshinori Sanada, Justine Sauvage, Glen Snyder, Rita Susilawati, Yoshinori Takano, Eiji Tasumi, Takeshi Terada, Hitoshi Tomaru, Elizabeth Trembath-Reichert, David T. Wang, Yasuhiro Yamada. Exploring deep microbial life in coal-bearing sediment down to ~2.5 km below the ocean floor. SCIENCE, 2015, 349, 6246, p. 420-424, doi: 10.1126/science.aaa6882
  • Yuki Morono, Takeshi Terada, Tatsuhiko Hoshino、 Fumio Inagaki. Hot-Alkaline DNA Extraction Method for Deep-Subseafloor Archaeal Communities. Applied and Environmental Microbiology, 2014, 80, 6, p. 1985-1994, doi: 10.1128/AEM.04150-13
  • Hot-alkaline DNA extraction method for deep subseafloor archaeal communities.. Appl. Environ. Microbiol., 2014, 80, p. 1985-1994
  • Yoko Ohtomo, Akira Ijiri, Yojiro Ikegawa, Masazumi Tsutsumi, Hiroyuki Imachi, Go-Ichiro Uramoto, Tatsuhiko Hoshino, Yuki Morono, Sanae Sakai, Yumi Saito, Wataru Tanikawa, Takehiro Hirose, Fumio Inagaki. Biological CO2 conversion to acetate in subsurface coal-sand formation using a high-pressure reactor system. Frontiers in Microbiology, 2013, 4, 361, p. 1-17, doi: 10.3389/fmicb.2013.00361
  • HOSHINO TATSUHIKO, HOSHINO TATSUHIKO, INAGAKI FUMIO, INAGAKI FUMIO. A comparative study of microbial diversity and community structure in marine sediments using poly(A) tailing and reverse transcription PCR. Frontiers in Microbiology, 2013, 4, p. 1-8
  • Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes. ISME J., 2013, 7, p. 555-567, doi: 10.1038/ismej.2012.124
  • Katsunori Yanagawa, Michinari Sunamura, Yuki Morono, Tatsuhiko Hoshino, Taiki Futagami, Takeshi Terada, Ko-ichi Nakamura, Dirk de Beer, Matthias Haeckel, Tetsuro Urabe, Gregor Rehder, Antje Boetius,　Fumio Inagaki. Metabolically active microbial communities in low pH CO2-seep sediments of the Yonaguni Knoll IV hydrothermal field, the southern Okinawa Trough. The ISME Journal, 2013, 7, p. 555-567
  • Katsunori Yanagawa, Yuki Morono, Dirk de Beer, Matthias Haeckel, Michinari Sunamura, Taiki Futagami, Tatsuhiko Hoshino, Takeshi Terada, Ko-ichi Nakamura, Tetsuro Urabe, Gregor Rehder, Antje Boetius, Fumio Inagaki. Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes. The ISME Journal, 2012, 7, p. 555-567, doi: 10.1038/ismej.2012.124
  • Tatsuhiko Hoshino, Fumio inagaki. Molecular quantification of environmental DNA using microfluidics and digital PCR. Systematic and Applied Microbiology, 2012, 25, p. 390-395
  • Molecular quantification of environmental DNA using microfluidics and digital PCR. Systematic and Applied Microbiology, 2012, 35, 6, p. 390-395
  • Tatsuhiko Hoshino, Yuki Morono, Takeshi Terada, Hiroyuki Imachi, Timothy G. Ferdelman, and Fumio Inagaki. Comparative study of subseafloor microbial community structures in deeply buried coral fossils and sediment matrices from the Challenger Mound in the Porcupine Seabight. Frontiers in Microbiology, 2011, 2, 231, doi: doi:10.3389/fmicb.2011.00231