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Research History
Research activity information
Papers
- Phouvilay Soulenthone; Tsukuru Tsukui; Miwa Suzuki; Yuya Tachibana; Shun’ichi Ishii; Hiroyuki Kashima; Yoshiyuki Ishitani; Ken-ichi Kasuya
Chitin-rich crab shell by-products modulate the marine lifetime of PHBV films via plastisphere remodeling
Polymer Degradation and Stability, Jul. 2026
249, 112075, 112075
[Reviewed] - Tomoya Suzuki; Miwa Suzuki; Phouvilay Soulenthone; Hidetaka Nomaki; Shun’ichi Ishii; Yoshiyuki Ishitani; Yuya Tachibana; Ken-ichi Kasuya
Endospore bioaugmentation accelerates and stabilizes biodegradation of poly(butylene succinate-co-adipate) in seawater
Polymer Degradation and Stability, Jul. 2026
249, 112077, 112077
[Reviewed] - Miwa Suzuki; Moeka Noguchi; Tomoya Suzuki; Phouvilay Soulenthone; Shun Tsuboi; Masa-aki Yoshida; Shun’ichi Ishii; Hiroyuki Kashima; Hidetaka Nomaki; Noriyuki Isobe; Keiji Numata; Yuya Tachibana; Ken-ichi Kasuya
Location-dependent marine biodegradability of aliphatic polyesters under simulated seawater conditions
Polymer Degradation and Stability, May 2026
247, 111975, 111975
[Reviewed] - Yoshiyuki Ishitani; Shunichi Ishii; Yurika Ujiié
The draft genome of the calcareous foraminifera Ammonia Veneta (rotaliida, globothalamea, foraminifera)
Protist, Mar. 2026
180, 126144, 126144
[Reviewed] - Kazuaki Amikura; Shun′ichi Ishii; Yoshihiro Shimizu; Shino Suzuki
Evolutionary Flexibility of Ribosome Biogenesis in Bacteria
Molecular Biology and Evolution, 29 Oct. 2025
42, 11
[Reviewed] - Shun’ichi Ishii; Sangho Koh; Miwa Suzuki; Ken-ichi Kasuya; Seiichi Taguchi
Unveiling deep-sea biodegradation of microbially produced lactate-based polyester (LAHB) via plastisphere metagenomics and metatranscriptomics
Polymer Degradation and Stability, Oct. 2025
240, 111527, 111527
[Reviewed]
Lead, Corresponding - Takamasa Miura; Rieko Kasaishi; Kohei Hidaka; Mamiko Shimamura; Moriyuki Hamada; Tomoyo Miyakawa; Yoko Kusuya; Yoshiyuki Ishitani; Shun’ichi Ishii; Yoko Furuno; Risa Yokoyama; Dai-ichiro Kato; Asuka Arimoto; Kazuya Fukuda; Tatsuya Ueki; Kunifumi Tagawa; Yoshihito Uchino; Kei Kamino
Aurantivibrio plasticivorans gen. nov., sp. nov. and Aurantivibrio infirmus sp. nov., biodegradable plastic-degrading bacteria belonging to the family Cellvibrionaceae, isolated from the coast of Japan
International Journal of Systematic and Evolutionary Microbiology, 19 Sep. 2025
75, 9
[Reviewed] - Noriyuki Isobe; Keiko Tanaka; Shun’ichi Ishii; Yasuhiro Shimane; Satoshi Okada; Kazuho Daicho; Wataru Sakuma; Kojiro Uetani; Toshihiro Yoshimura; Katsunori Kimoto; Satoshi Kimura; Tsuguyuki Saito; Ryota Nakajima; Masashi Tsuchiya; Tetsuro Ikuta; Shinsuke Kawagucci; Tadahisa Iwata; Hidetaka Nomaki
Fully circular shapable transparent paperboard with closed-loop recyclability and marine biodegradability across shallow to deep sea
Science Advances, 11 Apr. 2025
11, 15, eads2426
[Reviewed] - Noriyuki Isobe; Shun'ichi Ishii; Hidetaka Nomaki
Progress and prospects in polymer science addressing plastic pollution in marine environments, including the deep-sea floor
Current Opinion in Chemical Engineering, Mar. 2025
47, 101089, 101089
[Reviewed] - Hiroyuki Imachi; Masaru K. Nobu; Shun’ichi Ishii; Yuga Hirakata; Tetsuro Ikuta; Yuta Isaji; Makoto Miyata; Masayuki Miyazaki; Yuki Morono; Kazuyoshi Murata; Satoshi Nakagawa; Miyuki Ogawara; Satoshi Okada; Yumi Saito; Sanae Sakai; Shigeru Shimamura; Yuhei O. Tahara; Yoshihiro Takaki; Yoshinori Takano; Eiji Tasumi; Katsuyuki Uematsu; Toshihiro Yoshimura; Ken Takai
Eukaryotes’ closest relatives are internally simple syntrophic archaea
bioRxiv, 26 Feb. 2025 - Miwa Suzuki; Shun’ichi Ishii; Kohei Gonda; Hiroyuki Kashima; Shino Suzuki; Katsuyuki Uematsu; Takahiro Arai; Yuya Tachibana; Tadahisa Iwata; Ken-ichi Kasuya
Oceanic Biodegradation Mechanisms of Chemosynthetic Biodegradable Polyesters: Focusing on Poly(butylene succinate-co-adipate)
ACS Sustainable Resource Management, 22 Jan. 2025
[Reviewed]
Lead, Corresponding - Kazuaki Amikura; Shun’ichi Ishii; Yoshihiro Shimizu; Shino Suzuki
Evolutionary Flexibility of Ribosome Biogenesis in Bacteria
bioRxiv, 30 Nov. 2024
2024.11.29.625318 - Miwa Suzuki; Shun'ichi Ishii; Minori Ohta; Kohei Gonda; Hiroyuki Kashima; Takahiro Arai; Yuya Tachibana; Hiroyuki Takeno; Ken-ichi Kasuya
Enhancing marine biodegradability of poly(butylene succinate) by blending with 16-hydroxyhexadecanoic acid and poly(ε-caprolactone)
Polymer Degradation and Stability, Jul. 2024
110912, 110912
[Reviewed] - Shino Suzuki; Shun'ichi Ishii; Grayson L Chadwick; Yugo Tanaka; Atsushi Kouzuma; Kazuya Watanabe; Fumio Inagaki; Mads Albertsen; Per H Nielsen; Kenneth H Nealson
A non-methanogenic archaeon within the order Methanocellales.
Nature communications, 13 Jun. 2024
15, 1, 4858
[Reviewed]
Lead, Corresponding - Eri Kumagawa; Madoka Katsumata; Hiroshi Nishimura; Takashi Watanabe; Shun'ichi Ishii; Yukari Ohta
The etherase system of Novosphingobium sp. MBES04 functions as a sensor of lignin fragments through phenylpropanone production to induce specific transcriptional responses
Environmental Microbiology Reports, Feb. 2024
16, 1
[Reviewed]
Corresponding - Taku Omura; Noriyuki Isobe; Takamasa Miura; Shun’ichi Ishii; Mihoko Mori; Yoshiyuki Ishitani; Satoshi Kimura; Kohei Hidaka; Katsuya Komiyama; Miwa Suzuki; Ken-ichi Kasuya; Hidetaka Nomaki; Ryota Nakajima; Masashi Tsuchiya; Shinsuke Kawagucci; Hiroyuki Mori; Atsuyoshi Nakayama; Masao Kunioka; Kei Kamino; Tadahisa Iwata
Microbial decomposition of biodegradable plastics on the deep-sea floor
Nature Communications, 26 Jan. 2024
15, 1
[Reviewed] - Yurika Ujiié; Yoshiyuki Ishitani; Yukiko Nagai; Yoshihiro Takaki; Takashi Toyofuku; Shun’ichi Ishii
Unique evolution of foraminiferal calcification to survive global changes
Science Advances, 23 Jun. 2023
9, 25
[Reviewed] - Nagano Y.; Ishitani Y.; Isobe N.; Sakao Y.; Nakajima R.; Ishii S.; Kashima H.; Nomaki H.
Fungal diversity in deep-sea submerged plants
Abstracts of Papers Presented at the Meeting of the Mycological Society of Japan, 2023
67, 66b - Miwa Suzuki; Shun'ichi Ishii; Kohei Gonda; Hiroyuki Kashima; Shino Suzuki; Katsuyuki Uematsu; Takahiro Arai; Yuya Tachibana; Tadahisa Iwata; Ken-ichi Kasuya
Marine biodegradation mechanism of biodegradable plastics revealed by plastisphere analysis
09 Sep. 2022
Lead, Corresponding - McDaniel, E.A.; Wahl, S.A.; Ishii, S.; Pinto, A.; Ziels, R.; Nielsen, P.H.; McMahon, K.D.; Williams, R.B.H.
Prospects for multi-omics in the microbial ecology of water engineering
Water Research, Oct. 2021
205, 117608, 117608
[Reviewed] - Xie, L.; Yoshida, N.; Ishii, S.; Meng, L.
Isolation and polyphasic characterization of desulfuromonas versatilis sp. Nov., an electrogenic bacteria capable of versatile metabolism isolated from a graphene oxide-reducing enrichment culture
Microorganisms, 14 Sep. 2021
9, 9, 1953, 1953
[Reviewed] - Bird, L.J.; Kuenen, J.G.; Osburn, M.R.; Tomioka, N.; Ishii, S.; Barr, C.; Nealson, K.H.; Suzuki, S.
Serpentinimonas gen. Nov., serpentinimonas raichei sp. nov., serpentinimonas barnesii sp. nov. and serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs
International Journal of Systematic and Evolutionary Microbiology, 11 Aug. 2021
71, 8
[Reviewed] - Atsushi Urai; Yoshinori Takano; Hiroyuki Imachi; Shun’ichi Ishii; Yohei Matsui; Miyuki Ogawara; Eiji Tasumi; Yosuke Miyairi; Nanako O. Ogawa; Toshihiro Yoshimura; Fumio Inagaki; Yusuke Yokoyama; Kenjiro Kawano; Daisuke Murai; Ho-Dong Park; Naohiko Ohkouchi
Origin of Deep Methane Associated with a Unique Community of Microorganisms in an Organic- and Iodine-Rich Aquifer
ACS Earth and Space Chemistry, 21 Jan. 2021
5, 1, 1, 11
[Reviewed] - Ishii, S.; Imachi, H.; Kawano, K.; Murai, D.; Ogawara, M.; Uemastu, K.; Nealson, K.H.; Inagaki, F.
Bioelectrochemical Stimulation of Electromethanogenesis at a Seawater-Based Subsurface Aquifer in a Natural Gas Field
Frontiers in Energy Research, 17 Jan. 2019
6, 144
[Reviewed]
Lead, Corresponding - A. Urai; Y. Takano; H. Imachi; S. Ishii; Y. Matsui; M. Ogawara; Y. Miyairi; N. O. Ogawa; T. Yoshimura; F. Inagaki; Y. Yokoyama; H. D. Park; D. Murai; K. Kawano; N. Ohkouchi
Deep methagenesis and iodine-rich aquifer: Insight from organic geochemical approach
29th International Meeting on Organic Geochemistry, IMOG 2019, 2019 - Shino Suzuki; Kenneth H. Nealson; Shun’ichi Ishii
Genomic and in-situ Transcriptomic Characterization of the Candidate Phylum NPL-UPL2 From Highly Alkaline Highly Reducing Serpentinized Groundwater
Frontiers in Microbiology, 18 Dec. 2018
9
[Reviewed] - Ishii, S.; Suzuki, S.; Tenney, A.; Nealson, K.H.; Bretschger, O.
Comparative metatranscriptomics reveals extracellular electron transfer pathways conferring microbial adaptivity to surface redox potential changes
ISME Journal, Jul. 2018
12, 12
[Reviewed]
Lead, Corresponding - Atsushi Kouzuma; Shun'ichi Ishii; Kazuya Watanabe
Metagenomic insights into the ecology and physiology of microbes in bioelectrochemical systems
Bioresource Technology, 01 May 2018
255, 302, 307
[Reviewed] - Yukari Ohta; Yasuhiro Shimane; Shinro Nishi; Junko Ichikawa; Kanako Kurosawa; Taishi Tsubouchi; Shun'ichi Ishii
Complete genome sequence of Sphingobium sp. strain YG1, a lignin model dimermetabolizing bacterium isolated from sediment in Kagoshima Bay, Japan
Genome Announcements, 01 Apr. 2018
6, 17
[Reviewed] - Allyn H. Maeda; Shinro Nishi; Shun'ichi Ishii; Yasuhiro Shimane; Hideki Kobayashi; Junko Ichikawa; Kanako Kurosawa; Wataru Arai; Hideto Takami; Yukari Ohta
Complete genome sequence of Altererythrobacter sp. strain B11, an aromatic monomer-degrading bacterium, isolated from deep-sea sediment under the seabed offKashima, Japan
Genome Announcements, 01 Mar. 2018
6, 12
[Reviewed] - Urai Atsushi; Yokoyama Yusuke; Murai Daisuke; Kawano Kenjiro; Ohkouchi Naohiko; Takano Yoshinori; Ishii Shunichi; Imachi Hiroyuki; Matsui Yohei; Miyairi Yosuke; Ogawa Nanako; Yoshimura Toshihiro; Inagaki Fumio
Deep methanogenesis and iodine aquifer: an organic geochemical approach
Abstracts of Annual Meeting of the Geochemical Society of Japan, 2018
65, 0, 177, 177 - Inagaki Fumio; Imachi Hiroyuki; Kubo Yusuke; Morono Yuki; Hoshino Tatsuhiko; Ijiri Akira; Xiao Nan; Suzuki Shino; Ishii Shunichi; Uramoto Go-ichiro; Terada Takeshi
Exploration of the deep-subseafloor-biosphere frontiers: Achievements and perspectives
The Journal of the Geological Society of Japan, 2018
124, 1, 77, 92 - 石井 俊一
発電微生物群集中の発電菌とその機能遺伝子
環境バイオテクノロジー学会誌, 2018
18, 35, 42
[Reviewed], [Invited] - Shino Suzuki; Shun'ichi Ishii; Tatsuhiko Hoshino; Amanda Rietze; Aaron Tenney; Penny L. Morrill; Fumio Inagaki; J. Gijs Kuenen; Kenneth H. Nealson
Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars
ISME JOURNAL, Nov. 2017
11, 11, 2584, 2598
[Reviewed] - Shun'ichi Ishii; Shino Suzuki; Yuko Yamanaka; Angela Wu; Kenneth H. Nealson; Orianna Bretschger
Population dynamics of electrogenic microbial communities in microbial fuel cells started with three different inoculum sources
BIOELECTROCHEMISTRY, Oct. 2017
117, 74, 82
[Reviewed] - Atsushi Kouzuma; Maho Tsutsumi; Shun'ichi Ishii; Yoshiyuki Ueno; Takashi Abe; Kazuya Watanabe
Non-autotrophic methanogens dominate in anaerobic digesters
SCIENTIFIC REPORTS, May 2017
7, 1
[Reviewed] - Sofia Babanova; Kayla Carpenter; Sujal Phadke; Shino Suzuki; Shun'ichi Ishii; Tony Phan; Elysse Grossi-Soyster; Michael Flynn; John Hogan; Orianna Bretschger
The Effect of Membrane Type on the Performance of Microbial Electrosynthesis Cells for Methane Production
JOURNAL OF THE ELECTROCHEMICAL SOCIETY, 2017
164, 3, H3015, H3023
[Reviewed] - Orianna Bretschger; Kayla Carpenter; Tony Phan; Shino Suzuki; Shun'ichi Ishii; Elysse Grossi-Soyster; Michael Flynn; John Hogan
Functional and taxonomic dynamics of an electricity-consuming methane-producing microbial community
BIORESOURCE TECHNOLOGY, Nov. 2015
195, 254, 264
[Reviewed] - Shun'ichi Ishii; Shino Suzuki; Aaron Tenney; Trina M. Norden-Krichmar; Kenneth H. Nealson; Orianna Bretschger
Microbial metabolic networks in a complex electrogenic biofilm recovered from a stimulus-induced metatranscriptomics approach
SCIENTIFIC REPORTS, Oct. 2015
5
[Reviewed] - Orianna Bretschger; Shino Suzuki; Shun'ichi Ishii; Crystal Snowden; Lisa Mcdonald
Characterization of Electrode-Associated Biomass And Microbial Communities
Biofilms in Bioelectrochemical Systems: From Laboratory Practice to Data Interpretation, 12 Sep. 2015
83, 120
[Reviewed] - Shun'ichi Ishii; Shino Suzuki; Trina M. Norden-Krichmar; Tony Phan; Greg Wanger; Kenneth H. Nealson; Yuji Sekiguchi; Yuri A. Gorby; Orianna Bretschger
Microbial population and functional dynamics associated with surface potential and carbon metabolism
ISME JOURNAL, May 2014
8, 5, 963, 978
[Reviewed] - Shino Suzuki; J. Gijs Kuenen; Kira Schipper; Suzanne van der Velde; Shun'ichi Ishii; Angela Wu; Dimitry Y. Sorokin; Aaron Tenney; XianYing Meng; Penny L. Morrill; Yoichi Kamagata; Gerard Muyzer; Kenneth H. Nealson
Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site
NATURE COMMUNICATIONS, May 2014
5, 3900
[Reviewed] - Shun'ichi Ishii; Shino Suzuki; Trina M. Norden-Krichmar; Angela Wu; Yuko Yamanaka; Kenneth H. Nealson; Orianna Bretschger
Identifying the microbial communities and operational conditions for optimized wastewater treatment in microbial fuel cells
WATER RESEARCH, Dec. 2013
47, 19, 7120, 7130
[Reviewed] - Shun'ichi Ishii; Shino Suzuki; Trina M. Norden-Krichmar; Aaron Tenney; Patrick S. G. Chain; Matthew B. Scholz; Kenneth H. Nealson; Orianna Bretschger
A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer
NATURE COMMUNICATIONS, Mar. 2013
4
[Reviewed] - Suzuki, S.; Ishii, S.; Wu, A.; Cheung, A.; Tenney, A.; Wanger, G.; Kuenen, J.G.; Nealson, K.H.
Microbial diversity in the Cedars, an ultrabasic, ultrareducing, and low salinity serpentinizing ecosystem
Proceedings of the National Academy of Sciences of the United States of America, 2013
110, 38, 15336, 15341
[Reviewed] - Shun'ichi Ishii; Bruce E. Logan; Yuji Sekiguchi
Enhanced electrode-reducing rate during the enrichment process in an air-cathode microbial fuel cell
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, May 2012
94, 4, 1087, 1094
[Reviewed] - Shun'ichi Ishii; Shino Suzuki; Trina M. Norden-Krichmar; Kenneth H. Nealson; Yuji Sekiguchi; Yuri A. Gorby; Orianna Bretschger
Functionally Stable and Phylogenetically Diverse Microbial Enrichments from Microbial Fuel Cells during Wastewater Treatment
PLOS ONE, Feb. 2012
7, 2
[Reviewed] - Orianna Bretschger; Jason B. Osterstock; William E. Pinchak; Shun'ichi Ishii; Karen E. Nelson
Microbial Fuel Cells and Microbial Ecology: Applications in Ruminant Health and Production Research
MICROBIAL ECOLOGY, Apr. 2010
59, 3, 415, 427
[Reviewed] - Jeffrey S. McLean; Greg Wanger; Yuri A. Gorby; Martin Wainstein; Jeff McQuaid; Shun' Ichi Ishii; Orianna Bretschger; Haluk Beyenal; Kenneth H. Nealson
Quantification of Electron Transfer Rates to a Solid Phase Electron Acceptor through the Stages of Biofilm Formation from Single Cells to Multicellular Communities
ENVIRONMENTAL SCIENCE & TECHNOLOGY, Apr. 2010
44, 7, 2721, 2727
[Reviewed] - Takefumi Shimoyama; Souichiro Kato; Shun'ichi Ishii; Kazuya Watanabe
Flagellum mediates symbiosis.
Science (New York, N.Y.), 20 Mar. 2009
323, 5921, 1574, 1574
[Reviewed] - Gorby, Y.A.; Yanina, S.; McLean, J.S.; Rosso, K.M.; Moyles, D.; Dohnalkova, A.; Beveridge, T.J.; In, S.C.; Byung, H.K.; Kyung, S.K.; Culley, D.E.; Reed, S.B.; Romine, M.F.; Saffarini, D.A.; Hill, E.A.; Shi, L.; Elias, D.A.; Kennedy, D.W.; Pinchuk, G.; Watanabe, K.; Ishii, S.; Logan, B.; Nealson, K.H.; Fredrickson, J.K.
Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms
Proceedings of the National Academy of Sciences of the United States of America, 2009
106, 23, 9535
[Reviewed] - Shun'ichi Ishii; Kazuya Watanabe; Soichi Yabuki; Bruce E. Logan; Yuji Sekiguchi
Comparison of Electrode Reduction Activities of Geobacter sulfurreducens and an Enriched Consortium in an Air-Cathode Microbial Fuel Cell
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Dec. 2008
74, 23, 7348, 7355
[Reviewed] - Katsutoshi Hori; Hisarni Watanabe; Shun'ichi Ishii; Yasunori Tanji; Hajime Unno
Monolayer adsorption of a "bald" mutant of the highly adhesive and hydrophobic bacterium Acinetobacter sp strain tol 5 to a hydrocarbon surface
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Apr. 2008
74, 8, 2511, 2517
[Reviewed] - Tomoyuki Kosaka; Souichiro Kato; Takefumi Shimoyama; Shunichi Ishii; Takashi Abe; Kazuya Watanabe
The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota.
Genome research, Mar. 2008
18, 3, 442, 8
[Reviewed] - Shun'ichi Ishii; Yasuaki Hotta; Kazuya Watanabe
Methanogenesis versus electrogenesis: Morphological and phylogenetic comparisons of microbial communities
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, Feb. 2008
72, 2, 286, 294
[Reviewed] - Shun'ichi Ishii; Shunsuke Miyata; Yasuaki Hotta; Koji Yamamoto; Hajime Unno; Katsutoshi Hori
Formation of filamentous appendages by Acinetobacter sp Tol 5 for adhering to solid surfaces
JOURNAL OF BIOSCIENCE AND BIOENGINEERING, Jan. 2008
105, 1, 20, 25
[Reviewed] - Shun'ichi Ishii; Takefumi Shimoyama; Yasuaki Hotta; Kazuya Watanabe
Characterization of a filamentous biofilm community established in a cellulose-fed microbial fuel cell
BMC MICROBIOLOGY, Jan. 2008
8
[Reviewed] - 石井 俊一
微生物燃料電池における微生物による電子輸送
日本微生物生態学会誌, 2008
23, 58, 70
[Reviewed] - Shun'ichi Ishii; Hajime Unno; Shunsuke Miyata; Katsutoshi Hori
Effect of cell appendages on the adhesion properties of a highly adhesive bacterium, Acinetobacter sp Tol 5
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, Nov. 2006
70, 11, 2635, 2640
[Reviewed] - Shun'ichi Ishii; Tomoyuki Kosaka; Yasuaki Hotta; Kazuya Watanabe
Simulating the contribution of coaggregation to interspecies hydrogen fluxes in syntrophic methanogenic consortia
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Jul. 2006
72, 7, 5093, 5096
[Reviewed] - Yuri A. Gorby; Svetlana Yanina; Jeffrey S. McLean; Kevin M. Rosso; Dianne Moyles; Alice Dohnalkova; Terry J. Beveridge; In Seop Chang; Byung Hong Kim; Kyung Shik Kim; David E. Culley; Samantha B. Reed; Margaret F. Romine; Daad A. Saffarini; Eric A. Hill; Liang Shi; Dwayne A. Elias; David W. Kennedy; Grigoriy Pinchuk; Kazuya Watanabe; Shun'ichi Ishii; Bruce Logan; Kenneth H. Nealson; Jim K. Fredrickson
Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Jul. 2006
103, 30, 11358, 11363
[Reviewed] - T Kosaka; T Uchiyama; S Ishii; M Enoki; H Imachi; Y Kamagata; A Ohashi; H Harada; H Ikenaga; K Watanabe
Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum
JOURNAL OF BACTERIOLOGY, Jan. 2006
188, 1, 202, 210
[Reviewed] - 石井 俊一
メタン発酵共生微生物群が形成する凝集体の観察
医学生物学電子顕微鏡技術学会誌, 2006
20, 6, 8
[Reviewed] - S Ishii; T Kosaka; K Hori; Y Hotta; K Watanabe
Coaggregation facilitates interspecies hydrogen transfer between Pelotomaculum thermopropionicum and Methanothermobacter thermautotrophicus
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Dec. 2005
71, 12, 7838, 7845
[Reviewed] - S Ishii; J Koki; H Unno; K Hori
Two morphological types of cell appendages on a strongly adhesive bacterium, Acinetobacter sp strain Tol 5
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Aug. 2004
70, 8, 5026, 5029
[Reviewed] - 石井 俊一; 堀 克敏; 幸喜 順; 丹治 保典; 海野 肇
トルエン分解菌/Acinetobacter genospecies/I Tol 5の付着メカニズムの解析
化学工学会 研究発表講演要旨集, 2003
2003, 683, 683 - K Hori; S Ishii; G Ikeda; J Okamoto; Y Tanji; C Weeraphasphong; H Unno
Behavior of filamentous cyanobacterium Anabaena spp. in water column and its cellular characteristics
BIOCHEMICAL ENGINEERING JOURNAL, Apr. 2002
10, 3, 217, 225
[Reviewed] - K Hori; S Yamashita; S Ishii; M Kitagawa; Y Tanji; H Unno
Isolation, characterization and application to off-gas treatment of toluene-degrading bacteria
JOURNAL OF CHEMICAL ENGINEERING OF JAPAN, Sep. 2001
34, 9, 1120, 1126
[Reviewed]
Books and Other Publications
- 石井 俊一, Contributor, 第１編 第6章 メタオミクス解析による微生物群集代謝ネットワーク解析
難培養微生物研究の最新技術III
CMC出版, 2015
9784781310817 - 石井 俊一, Contributor, 第１編 第1章4節 微生物燃料電池内の微生物群集の遺伝子発現解析
微生物燃料電池による発電・省エネ型廃棄物・廃水処理技術最前線
NTS出版, Oct. 2013
9784864690775 - 石井 俊一, Contributor, 第20章 微生物燃料電池の最近の進歩
バイオ電気化学の実際‐バイオセンサ･バイオ電池の実用展開
CMC出版, Mar. 2007
9784882316794
Presentations
- Shun’ichi Ishii; Shino Suzuki; Tatsuhiko Hoshino
Subsurface Electro-biosphere: Electroactive microbes inhabiting iron-rich hot springs
9th World Conference of the International Society for Microbial Electrochemistry and Technology (ISMET9), 19 Sep. 2025 - 石井 俊一; 大前 公保; 鈴木 志野
蛇紋岩化反応が駆動する活発な微生物メタン生成：Methanobacterium属 の比較ゲノミクスおよび現場トランスクリプトーム解析
日本微生物生態学会 第38回 東京大会, 08 Sep. 2025 - Shun’ichi Ishii
Plastisphere Microbiome: In Situ Metatranscriptomics Unveiled Oceanic Biodegradation Process of Polyesters
Gordon Research Conference (GRC), Applied Environmental Microbiology 2025, 15 Jul. 2025, [Invited] - 石井俊一; 鹿島裕之; 鈴木美和; 粕谷健一
マルチメタオミクス解析により解き明かす生分解性プラスチックの海洋生分解スキーム
日本微生物生態学会第37回広島大会, 30 Oct. 2024 - Shun’ichi Ishii; Hiroyuki Kashima; Miwa Suzuki; Kenichi Kasuya
Biodegradation mechanism of biodegradable plastics in the ocean revealed by Meta-Omics analysis
Moonshot workshop on research and development of marine biodegradable plastics with biodegradable initiation @ ISBP2024, 23 Oct. 2024, [Invited] - 岩田忠久・大村拓・込山活哉・木村聡,磯部紀之・石井俊一・石谷佳之・野牧秀隆・中嶋亮太・土屋正史・川口慎介,粕谷健一・鈴木美和,三浦隆匡・森美穂子・日高皓平・紙野圭,国岡正雄・中山敦好,森浩之
深海でも生分解性プラスチックは分解することを実証
海と地球のシンポジウム2023, 02 Mar. 2024 - 石井 俊一; 星野 辰彦; 鈴木 志野; 清川 昌一
薩摩硫黄島の鉄リッチなチムニーに生息する電気微生物の網羅的解析
微生物生態学会第36回大会 シンポジウム 微生物電気化学が切り拓く未来 ～電気微生物の探索・創成・応用～, 30 Nov. 2023, [Invited] - 鹿島裕之、石井俊一、石谷佳之、長野由梨子、中嶋亮太、磯部紀之、野牧秀隆
深海底及び沿岸海底環境において汎用使い捨てプラスチック素材上に形成される微生物叢
日本微生物生態学会第３６回浜松大会アジア微生物生態シンポジウム第１３回大会浜松大会, 28 Nov. 2023 - 石井俊一
地下圏における電気微生物の探索とCarbon Capture and Utilization (CCU)への応用展開
極限環境生物学会 第24回シンポジウム 電気微生物フェス2023 in 北海道 ―エレクトリックでロッ クでメタルな可愛いヤツら―, 29 Aug. 2023, [Invited] - 長野由梨子・石谷佳之・磯部紀之・坂尾優希・中嶋亮太・石井俊一・鹿島裕之・野牧秀隆
深海底に沈む植物片をニッチとした深海生菌類の多様性
第67回日本菌学会, 28 May 2023 - Ishitani Yoshiyuki, Ishii Shunichi, Kashima Hiroyuki, Sakao Yuki, Isobe Noriyuki, Nagano Yuriko, Nakajima Ryota, Nomaki Hidetaka
Can plastic debris distribute microbes all over the ocean?
Japan Geological union - American geological union joint meeting 2023, 26 May 2023 - Shunichi Ishii, Shino Suzuki
Desulfobulbaceae科の比較ゲノミクス 〜新奇電気微生物の細胞外電子授受機構
微生物生態学会 第35回大会, 01 Nov. 2022 - 石井俊一; 鈴木美和; 粕谷健一
メタオミクス解析で解き明かす実海洋環境でのプラスチックの生分解プロセス
第74回日本生物工学会大会 シンポジウム「持続発展可能な未来社会を創造するバイオプラスチック の最前線, 18 Oct. 2022, [Invited] - 磯部紀之, 田中圭子, 石井俊一, 齋藤継之, 野牧秀隆
肉厚な再生セルロースからなる透明板紙の成形加工・リサイクル・深海分解性
セルロース学会第29回年次大会, 22 Jul. 2022 - 石井俊一
固体から電子を抜き取る電気合成微生物群集を用いた電気メタン生成
日本微生物生態学会第34回大会 自由集会１：電気合成微生物の生理・生態と産業利用の可能性, 30 Oct. 2021, [Invited] - 石井俊一
地下圏に生息する電気メタン合成菌を使用したCO2と電気からのメタン生成
2021年電気化学秋季大会, 08 Sep. 2021, [Invited] - 氏家由利香、石谷佳之、石井俊一、長井裕季子、高木義弘、生田哲郎、豊福高志
トランスクリプトーム解析に基づく有孔虫の石灰化分子機構
日本古生物学会第169回例会, 東京大学駒場キャンパス, 08 Feb. 2020 - Shunichi Ishii, Shino Suzuki, Kenneth H Nealson
Mineral-Microbe interaction: Identification of microbial extracellular electron transfer mechanisms by using MetaOmics approach
JpGU meeting 2019 [B-CG06] 地球惑星科学 生命圏フロンティアセッション, 28 May 2019, [Invited] - 氏家由利香, 石谷佳之, 石井俊一, 長井裕季子, 高木義弘, 豊福高志, 生田哲郎
有孔虫の炭酸塩の殻形成に関する分子機構-トランスクリプトーム解析から-
第13回バイオミネラリゼーションワークショップ, 09 Nov. 2018 - Shino Suzuki、Shun'ichi Ishii、J. Gijs Kuenen、Kenneth H. Nealson
Microbial adaptive evolution to the extreme geochemistry occurring at the serpentinization systems
日本微生物生態学会 第32回大会, 12 Jul. 2018 - Shun'ichi Ishii
Comparative metatranscriptomics reveals extracellular electron transfer pathways in electrogenic microbiomes conferring microbial adaptivity to surface redox potential changes
日本微生物生態学会32回大会, Jul. 2018 - Saki Mizobuchi, Taisuke Wakamatsu, Takashi Morisawa, Nana Nishigawa, Takeshi Terada, Shun’ichi Ishii, Fumio Inagaki, Makoto Ashiuchi, and Yuki Morono
Improvement of substrate-induced gene expression (SIGEX) for exploring genome function in subseafloor sedimentary metagenomes
JpGU2018, 22 May 2018 - 石井俊一
刺激応答型メタトランスクリプトミクスで解き明かす発電菌群集の菌体外電子輸送メカニズム
山口大学中高温微生物研究センター発酵部門セミナー, 19 Jan. 2018, [Invited] - Shun'ichi Ishii
Bioelectrochemical stimulation of methanogenic microbial communities in a seawater-based subsurface aquifer system
5th international meeting on microbial electrochemistry and technologies (ISMET6), Oct. 2017 - 花田祐一、石井俊一、Ana Z. Miller, Jose; M. Marques、Kenneth H. Nealson、鈴木志野
Hyperalkaliphiles：蛇紋岩深部流体と地球表層の境界に形成される超アルカリ性生命圏
環境微生物系学会合同大会2017, 29 Aug. 2017 - 石井 俊一
システムゲノミクスで解き明かす“発電微生物”の多様な生き様
環境微生物系学会合同大会2017, Aug. 2017, [Invited] - Shun'ichi Ishii
Stimulus-induced metatranscriptomic analysis for exoelectrogenic microbial communities adapted to different surface potentials
9th Asian Symposium on Microbial Ecology, Apr. 2017, [Invited] - 石井 俊一
電気産生微生物群集における電極の酸化還元電位の変化に対する多様な遺伝子発現応答
日本微生物生態学会第31回大会, Oct. 2016 - 石井俊一
微生物群集内の電子輸送メカニズム
超循環型社会の創出に向けた微生物電気化学イノベーションワークショップ, 20 Jul. 2016, [Invited] - Imachi H, Tasumi E, Tu T-H, Ijiri A, Morono Y, Ishii S, Methe BA, Takai K, Inagaki F
Identifying 2 km-deep methanogenic community members using a long-term bioreactor cultivation
Goldschimidt2016, 29 Jun. 2016 - 稲垣 史生・石井 俊一・井町 寛之 (発表者:稲垣 史生)
生物電気化学や地球生命工学的手法による 生物電気化学や地球生命工学的手法による持続的CO2資源化・利活用システムの創出
日本化学会第96春季大会, 24 Mar. 2016, [Invited] - 稲垣史生・石井俊一・井町寛之
生物電気化学や地球生命工学的手法による持続的CO2資源化・利活用システムの創出
日本化学会第96春季大会, 24 Mar. 2016, [Invited] - Shun'ichi Ishii
Metagenomic analysis for electrogenic microbial communities adapted to different surface potentials
5th international meeting on microbial electrochemistry and technologies (ISMET2015), Oct. 2015 - Shun'ichi Ishii
Acceleration of microbial electrocatalysis for energy recovery
Nanogeoscience 2015, Sep. 2015, [Invited] - 石井俊一
微生物と電気を用いたCO2からの物質生産
海洋科学技術が切り拓く 地球環境とエネルギーの未来, 24 Jun. 2015 - 生物電気化学や合成生物学を駆使したCO2転換技術の展望について
JOGMEC水溶性天然ガス田の生産に係る技術検討会「水溶性天然ガス（ガス田）を対象とした炭素循環の可能性検討」第４回ワーキンググループ会議, 23 Jan. 2015, [Invited] - Shun'ichi Ishii
Metabolic network in electrogenic biofilms identified by metatranscriptomic approach
2nd NA-ISMET, May 2014 - 石井 俊一; 鈴木 志野; Nealson Kenneth H; Bretschger Orianna
S14-02 電気産生微生物群集の電極電位に対する遺伝子発現応答(S14 微生物細胞外電子伝達「生態学的意義とバイオテクノロジー」,シンポジウム)
日本微生物生態学会講演要旨集, 2014 - 鈴木 志野; 石井 俊一; 星野 辰彦; 稲垣 史生; 鎌形 洋一; Gijs Kuenen J.; Nealson H. Kenneth
O34-03 The Cedars蛇紋岩水系に生息する微生物群のメタゲノムおよび生理機能解析(口頭発表)
日本微生物生態学会講演要旨集, 2014 - 高妻 篤史; 月田 匠二; 石井 俊一; 阿部 貴志; 渡邉 一哉
P15-8 酢酸資化性単槽型微生物燃料電池内に局在する微生物群集の比較メタゲノム解析(ポスター発表)
日本微生物生態学会講演要旨集, 2014 - Shun'ichi Ishii
Electricity generating microbes and the redox active machinery
2nd Nagoya Biomimetics International Symposium (NaBIS), Nov. 2013, [Invited] - Shun'ichi Ishii
Microbial and genetic response for facilitating electricity generation in wastewater-fed microbial fuel cell
NA-ISMET, Oct. 2012 - Shino Ishii; Shun'ichi Ishii; Angela Wu; Tony Phan; Kenneth H. Nealson; Orianna Bretschger
Microbial community dynamics as a function of different anodic redox potentials in a bioelectrochemical cell
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, Mar. 2012 - Shun'ichi Ishii
Facilitating wastewater treatment under higher current condition in microbial fuel cells
ACS 243rd National Meeting, Mar. 2012 - Orianna Bretschger; Eric Son; Shino Ishii; Shun'ichi Ishii; Greg Wanger; Kenneth H. Nealson
Large-scale microbial fuel cell system for energy recovery and treatment of municipal sludge
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, Mar. 2011 - Shun'ichi Ishii
Mixed community microbial fuel cell enrichments fed with different carbon sources show temporally enhanced performance and reproducible phylogeny
ACS 241st National Meeting, Mar. 2011 - Shun'ichi Ishii
Electricity-generating microbial community in an air-cathode microbial fuel cell fed with primary clarifier effluent
13th International symposium of microbial ecology (ISME13), Aug. 2010 - Shun'ichi Ishii
Electricity production from primary clarifier effluent using an air-cathode microbial fuel cell
110th ASM general meeting, May 2010 - Shun'ichi Ishii
Comparison of electrode reducing properties of Geobacter sulfurreducens and an enriched consortium in an air-cathode microbial fuel cell
2nd MFC symposium, Jun. 2009 - Shun'ichi Ishii
Characterization of electrode-reducing rate of Geobacter sulfurreducens in an air-cathode microbial fuel cell
1st MFC symposium, May 2008 - 石井 俊一
Methanogenesis versus electrogenesis: morphological and phylogenetic comparisons of microbial communities
日本微生物生態学会第23回大会, Sep. 2007 - Shun'ichi Ishii
Characterization of a filamentous biofilm community established in a cellulose-fed microbial fuel cell
Gordon Research Conference of Applied Environmental Microbiology 2007, Jul. 2007 - Kosaka Tomoyuki; Abe Takashi; Kato Souichirou; Shimoyama Takefumi; Ishii Shunichi; Watanabe Kazuya
PA-35 The complete genome sequence of the syntrophic propionate oxidizing bacterium Pelotomaculum thermopropionicum(Symbiosis/Cell to cell interaction,Poster presentation A) :
日本微生物生態学会講演要旨集, 2007 - Shun'ichi Ishii
The syntrophy model for simulating interspecies hydrogen transfer between syntrophic bacteria and methanogenic archaea
11th International Symposium on Microbial Ecology, Aug. 2006 - Kosaka Tomoyuki; Ishii Shun'ichi; Watanabe Kazuya
B-05 Functional genomics of a syntrophic propionate-oxidizing bacterium(Genetic analysis,(2)Oral presentation)
日本微生物生態学会講演要旨集, 2006 - TAKADA Shuhei; ISHII Shun'ichi; UNNO Hajime; HORI Katsutoshi
2H11-1 Analysis of the adhesin gene in Acinetobacter sp. Tol5
日本生物工学会大会講演要旨集, 2006 - Shun'ichi Ishii
Facilitation of hydrogen-mediated syntrophic methanogenesis by coaggregation
Gordon Research Conference of Applied Environmental Microbiology 2005, Jul. 2005 - ISHII Shun'ichi; KOSAKA Tomoyuki; WATANABE Kazuya
3E15-2 Facilitation of hydrogen-mediated syntrophic methanogenesis by coaggregation
日本生物工学会大会講演要旨集, 2005 - WATANABE Hisami; ISHII Shun'ichi; TANJI Yasunori; UNNO Hajime; HORI Katsutoshi
2I14-1 Study on effective reaction by microbial cells in an oil-water two-phase system
日本生物工学会大会講演要旨集, 2004 - ISHII Shun'ichi; KOSAKA Tomoyuki; WATANABE Kazuya
2D11-3 Analysis of the correlation between Pelotomaculum thermopropionicum strain SI and methanogen at the methane fermentation
日本生物工学会大会講演要旨集, 2004 - Shun'ichi Ishii
Adhesion mechanism of a newly isolated toluene degrading bacterium 1: novel appendages causing tenacious adhesion
11th European Congress on Biotechnology, Aug. 2003
