Researcher Information
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Research activity information
Papers
- Natsumi Hookabe; Shimpei F Hiruta; Akinori Yabuki; Hiroki Yoshino; Yu Hisasue; Naoto Sawada; Rei Ueshima; Hiroshi Kajihara
Unrecognized species-level diversity of terrestrial nemerteans in the UNESCO world heritage Ogasawara Islands revealed by mitogenomics.
BMC ecology and evolution, 19 Dec. 2025
25, 1, 135, 135 - Aika Shibata; Chiaki Yamamoto; Yuma Tani; Ryuji Yanase; Kogiku Shiba; Yu Sato; Akinori Yabuki; Kazuo Inaba
The photophobic response in the apusomonad Podomonas kaiyoae is mediated by coordination of cilia and actin filaments.
Communications biology, 18 Dec. 2025
8, 1, 1787, 1787 - Ayhan Yurtsever; Kazuho Daicho; Fabio Priante; Keisuke Miyazawa; Mohammad Shahidul Alam; Kazuki Miyata; Akinori Yabuki; Noriyuki Isobe; Tsuguyuki Saito; Adam S Foster; Takeshi Fukuma
Interplay between β-Chitin Nanocrystal Supramolecular Architecture and Water Structuring: Insights from Three-Dimensional Atomic force Microscopy Measurements and Molecular Dynamics Simulations.
Journal of the American Chemical Society, 29 Oct. 2025
147, 43, 39134, 39150 - Daria Tashyreva; Jan Votýpka; Akinori Yabuki; Aleš Horák; Julius Lukeš
Description of new diplonemids (Diplonemea, Euglenozoa) and their endosymbionts: Charting the morphological diversity of these poorly known heterotrophic flagellates.
Protist, Jun. 2025
177, 126090, 126090 - Goro Tanifuji; Mami Matsuda; Takanobu Yoshida; Akinori Yabuki; Motoo Ito; Yoshiyuki Ishitani; Hidetaka Nomaki; Ryoma Kamikawa; Tomohisa Hasunuma; Yuichiro Kashiyama
Calvin Cycle in a Non-photosynthetic Alga
12 May 2025 - Ryo Harada; Yuki Nishimura; Mami Nomura; Akinori Yabuki; Kogiku Shiba; Kazuo Inaba; Yuji Inagaki; Takuro Nakayama
A cellular entity retaining only its replicative core: Hidden archaeal lineage with an ultra-reduced genome
02 May 2025 - Nakayama, Takuro; Harada, Ryo; Yabuki, Akinori; Nomura, Mami; Shiba, Kogiku; Inaba, Kazuo; Inagaki, Yuji
Drastic genome reduction driven by parasitic lifestyle: Two complete genomes of endosymbiotic bacteria possibly hosted by a dinoflagellate.
bioRχiv, Jan. 2025 - Ryo Harada; Takashi Shiratori; Akinori Yabuki; Yuji Inagaki; Andrew J Roger; Ryoma Kamikawa
Complete Mitochondrial Genomes of Ancyromonads Provide Clues for the Gene Content and Genome Structures of Ancestral Mitochondria.
The Journal of eukaryotic microbiology, 18 May 2025
72, 3, e70012 - Takuro Nakayama; Ryo Harada; Akinori Yabuki; Mami Nomura; Kogiku Shiba; Kazuo Inaba; Yuji Inagaki
Marked Genome Reduction Driven by a Parasitic Lifestyle: Two Complete Genomes of Endosymbiotic Bacteria Possibly Hosted by a Dinoflagellate.
Microbes and environments, 04 Jan. 2025
40, 2 - Akinori Yabuki; Chihaya Fujii; Euki Yazaki; Akihiro Tame; Keiko Mizuno; Yumiko Obayashi; Yoshitake Takao
Massive RNA Editing in Ascetosporean Mitochondria.
Microbes and environments, 2025
40, 1 - Yuriko Nagano; Mohamed A. Abdel-Wahab; Ryota Nakajima; Akinori Yabuki
Oceanitis abyssalis sp. nov., a new deep-sea fungus from sunken wood collected at the depth of 5707 m in the Northwest Pacific Ocean
PHYTOTAXA, 27 Aug. 2024
663, 4, 171, 183 - Susumu Takatsuka; Norio Miyamoto; Hidehito Sato; Yoshiaki Morino; Yoshihisa Kurita; Akinori Yabuki; Chong Chen; Shinsuke Kawagucci
Millisecond-scale behaviours of plankton quantified in vitro and in situ using the Event-based Vision Sensor.
Ecology and evolution, Aug. 2024
14, 8, e70150 - Takuro Nakayama; Mami Nomura; Akinori Yabuki; Kogiku Shiba; Kazuo Inaba; Yuji Inagaki
Convergent reductive evolution of cyanobacteria in symbiosis with Dinophysiales dinoflagellates
Scientific Reports, 04 Jun. 2024
14, 1, 12774, 12774 - Akinori Yabuki; Tatsuhiko Hoshino; Tamiko Nakamura; Keiko Mizuno
The copy number of the eukaryotic rRNA gene can be counted comprehensively.
MicrobiologyOpen, Apr. 2024
13, 2, e1399 - Ryo Harada; Yoshihisa Hirakawa; Akinori Yabuki; Eunsoo Kim; Euki Yazaki; Ryoma Kamikawa; Kentaro Nakano; Marek Eliáš; Yuji Inagaki
Encyclopaedia of DNA polymerases localized in organelles: Evolutionary contribution of diverse bacteria including the proto-mitochondrion
Molecular biology and evolution, 29 Aug. 2023
41, 2 - Akinori Yabuki; Akihiro Tame; Keiko Mizuno
Podomonas kaiyoae n. sp., a novel apusomonad growing axenically.
The Journal of eukaryotic microbiology, Mar. 2023
70, 2, e12946 - Joan M. Bernhard; Hidetaka Nomaki; Takashi Shiratori; Anastasia Elmendorf; Akinori Yabuki; Katsunori Kimoto; Masashi Tsuchiya; Motohiro Shimanaga
Hydrothermal vent chimney-base sediments as unique habitat for meiobenthos and nanobenthos: Observations on millimeter-scale distributions
Frontiers in Marine Science, 12 Jan. 2023
9 - Yuto Chiba; Akinori Yabuki; Yoshihiro Takaki; Takuro Nunoura; Syun-Ichi Urayama; Daisuke Hagiwara
The First Identification of a Narnavirus in Bigyra, a Marine Protist.
Microbes and environments, 2023
38, 1 - Takao Yoshida; Masaru Kawato; Yoshihiro Fujiwara; Yuriko Nagano; Shinji Tsuchida; Akinori Yabuki
Optimization of environmental DNA analysis using pumped deep-sea water for the monitoring of fish biodiversity
FRONTIERS IN MARINE SCIENCE, Jan. 2023
9 - Euki Yazaki; Akinori Yabuki; Yuki Nishimura; Takashi Shiratori; Tetsuo Hashimoto; Yuji Inagaki
Microheliella maris possesses the most gene-rich mitochondrial genome in Diaphoretickes
Frontiers in Ecology and Evolution, 04 Nov. 2022
10 - Nakajima Ryota; Miyama Toru; Kitahashi Tomo; Isobe Noriyuki; Nagano Yuriko; Ikuta Tetsuro; Oguri Kazumasa; Tsuchiya Masashi; Yoshida Takao; Aoki Kunihiro; Maeda Yosaku; Fujikura Katsunori; Yabuki Akinori; Kawamura Kiichiro; Suzukawa Maki; Yamauchi Takuya; Ritchie Heather
Plastic after an extreme storm: A typhoon transports a tremendous amount of plastic debris into the ocean
Bulletin of the Plankton Society of Japan, 25 Aug. 2022
69, 2, 104, 105 - Tomonori Azuma; Tomáš Pánek; Alexander K. Tice; Motoki Kayama; Mayumi Kobayashi; Hideaki Miyashita; Toshinobu Suzaki; Akinori Yabuki; Matthew W. Brown; Ryoma Kamikawa
An Enigmatic Stramenopile Sheds Light on Early Evolution in Ochrophyta Plastid Organellogenesis
Molecular Biology and Evolution, 10 Apr. 2022
39, 4 - Daria Tashyreva; Alastair G B Simpson; Galina Prokopchuk; Ingrid Škodová-Sveráková; Anzhelika Butenko; Michael Hammond; Emma E George; Olga Flegontova; Kristína Záhonová; Drahomíra Faktorová; Akinori Yabuki; Aleš Horák; Patrick J Keeling; Julius Lukeš
Diplonemids - A Review on "New" Flagellates on the Oceanic Block.
Protist, Apr. 2022
173, 2, 125868, 125868 - Euki Yazaki; Akinori Yabuki; Ayaka Imaizumi; Keitaro Kume; Tetsuo Hashimoto; Yuji Inagaki
The closest lineage of Archaeplastida is revealed by phylogenomics analyses that include Microheliella maris.
Open biology, Apr. 2022
12, 4, 210376, 210376 - Ryota Nakajima; Toru Miyama; Tomo Kitahashi; Noriyuki Isobe; Yuriko Nagano; Tetsuro Ikuta; Kazumasa Oguri; Masashi Tsuchiya; Takao Yoshida; Kunihiro Aoki; Yosaku Maeda; Kiichiro Kawamura; Maki Suzukawa; Takuya Yamauchi; Heather Ritchie; Katsunori Fujikura; Akinori Yabuki
Plastic After an Extreme Storm: The Typhoon-Induced Response of Micro- and Mesoplastics in Coastal Waters
Frontiers in Marine Science, 13 Jan. 2022
8 - Yazaki, Euki; Yabuki, Akinori; Imaizumi, Ayaka; Kume, Keitaro; Hashimoto, Tetsuo; Inagaki, Yuji
Phylogenomics invokes the clade housing Cryptista, Archaeplastida, and Microheliella maris.
bioRχiv, Aug. 2021 - Yuichiro Kashiyama; Yuki Ishizuka; Issei Terauchi; Toshiki Matsuda; Yoshiaki Maeda; Tomoko Yoshino; Mitsufumi Matsumoto; Akinori Yabuki; Chris Bowler; Tsuyoshi Tanaka
Engineered chlorophyll catabolism conferring predator resistance for microalgal biomass production.
Metabolic engineering, Jul. 2021
66, 79, 86 - Nurlatifah; Takuya Yamauchi; Ryota Nakajima; Masashi Tsuchiya; Akinori Yabuki; Tomo Kitahashi; Yuriko Nagano; Noriyuki Isobe; Haruhiko Nakata
Plastic additives in deep-sea debris collected from the western North Pacific and estimation for their environmental loads
Science of The Total Environment, May 2021
768, 144537, 144537 - Ryota Nakajima; Masashi Tsuchiya; Akinori Yabuki; Shuhei Masuda; Tomo Kitahashi; Yuriko Nagano; Tetsuro Ikuta; Noriyuki Isobe; Haruhiko Nakata; Heather Ritchie; Kazumasa Oguri; Satoshi Osafune; Kiichiro Kawamura; Maki Suzukawa; Takuya Yamauchi; Koichi Iijima; Takao Yoshida; Sanae Chiba; Katsunori Fujikura
Massive occurrence of benthic plastic debris at the abyssal seafloor beneath the Kuroshio Extension, the North West Pacific.
Marine pollution bulletin, 16 Mar. 2021
166, 112188, 112188 - Akinori Yabuki; Masaru Kawato; Yuriko Nagano; Shinji Tsuchida; Takao Yoshida; Yoshihiro Fujiwara
Structural Comparison of Diplonemid Communities around the Izu Peninsula, Japan.
Microbes and environments, 2021
36, 2 - Tomo Kitahashi; Ryota Nakajima; Hidetaka Nomaki; Masashi Tsuchiya; Akinori Yabuki; Sojiro Yamaguchi; Chunmao Zhu; Yugo Kanaya; Dhugal J. Lindsay; Sanae Chiba; Katsunori Fujikura
Development of robust models for rapid classification of microplastic polymer types based on near infrared hyperspectral images
Analytical Methods, 2021
13, 19, 2215, 2222 - Masaru Kawato; Takao Yoshida; Masaki Miya; Shinji Tsuchida; Yuriko Nagano; Michiyasu Nomura; Akinori Yabuki; Yoshihiro Fujiwara; Katsunori Fujikura
Optimization of environmental DNA extraction and amplification methods for metabarcoding of deep-sea fish
MethodsX, 2021
8, 101238, 101238 - Motoki Kayama; Kacper Maciszewski; Akinori Yabuki; Hideaki Miyashita; Anna Karnkowska; Ryoma Kamikawa
Highly Reduced Plastid Genomes of the Non-photosynthetic Dictyochophyceans Pteridomonas spp. (Ochrophyta, SAR) Are Retained for tRNA-Glu-Based Organellar Heme Biosynthesis
Frontiers in Plant Science, 27 Nov. 2020
11, 602455, 602455 - Yabuki Akinori; Kawato Masaru; Nagano Yuriko; Tsuchida Shinji; Yoshida Takao; Fujiwara Yoshihiro
New barcoding primers for the efficient monitoring of diplonemid diversity
Journal of Protistology, 27 Jul. 2020
52, 1, 5
[Reviewed] - Takashi Shiratori; Akinori Yabuki; Ken-Ichiro Ishida
Morphology, Ultrastructure, and Phylogeny of Two Novel Species of Ventrifissura (V. oblonga n. sp. and V. velata n. sp., Thecofilosea, Cercozoa).
Protist, Jul. 2020
171, 3, 125731, 125731
[Reviewed] - Ryo Harada; Yoshihisa Hirakawa; Akinori Yabuki; Yuichiro Kashiyama; Moe Maruyama; Ryo Onuma; Petr Soukal; Shinya Miyagishima; Vladimir Hampl; Goro Tanifuji; Yuji Inagaki
Inventory and evolution of mitochondrion-localized family A DNA polymerases in Euglenozoa.
Pathogens, Apr. 2020
9, 4
[Reviewed] - Yuichiro Kashiyama; Akiko Yokoyama; Takashi Shiratori; Sebastian Hess; Fabrice Not; Charles Bachy; Andres Gutierrez-Rodriguez; Jun Kawahara; Toshinobu Suzaki; Masami Nakazawa; Takahiro Ishikawa; Moe Maruyama; Mengyun Wang; Man Chen; Yingchun Gong; Kensuke Seto; Maiko Kagami; Yoko Hamamoto; Daiske Honda; Takahiro Umetani; Akira Shihongi; Motoki Kayama; Toshiki Matsuda; Junya Taira; Akinori Yabuki; Masashi Tsuchiya; Yoshihisa Hirakawa; Akane Kawaguchi; Mami Nomura; Atsushi Nakamura; Noriaki Namba; Mitsufumi Matsumoto; Tsuyoshi Tanaka; Tomoko Yoshino; Rina Higuchi; Akihiro Yamamoto; Tadanobu Maruyama; Aika Yamaguchi; Akihiro Uzuka; Shinya Miyagishima; Goro Tanifuji; Masanobu Kawachi; Yusuke Kinoshita; Hitoshi Tamiaki
Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth.
The ISME journal, Aug. 2019
13, 8, 1899, 1910 - Galina Prokopchuk; Daria Tashyreva; Akinori Yabuki; Aleš Horák; Petra Masařová; Julius Lukeš
Morphological, Ultrastructural, Motility and Evolutionary Characterization of Two New Hemistasiidae Species.
Protist, Jul. 2019
170, 3, 259, 282
[Reviewed] - Yuki Hongo; Akinori Yabuki; Katsunori Fujikura; Satoshi Nagai
Genes functioned in kleptoplastids of Dinophysis are derived from haptophytes rather than from cryptophytes.
Scientific reports, 21 Jun. 2019
9, 1, 9009, 9009
[Reviewed] - Kashiyama Y; Yokoyama A; Shiratori T; Bachy C; Gutierrez-Rodriguez A; Not F; Hess S; Wang M; Chen M; Gong Y; Seto K; Kagami M; Hamamoto Y; Honda D; Umetani T; Shihongi A; Kayama M; Matsuda T; Taira J; Yabuki A; Tsuchiya M; Hirakawa Y; Kawaguchi A; Nomura M; Nakamura A; Namba N; Matsumoto M; Tanaka T; Yoshino T; Higuchi R; Yamamoto A; Maruyama T; Yamaguchi A; Uzuka A; Miyagishima S; Kawahara J; Suzaki T; Nakazawa M; Ishikawa T; Maruyama M; Tanifuji G; Kinoshita Y; Tamiaki H
Taming chlorophylls allowed eukaryotes to prosper on the oxygenated Earth
The ISME journal, Feb. 2019
[Reviewed] - H. Matsuo; K. Nonaka; Y. Nagano; A. Yabuki; K. Fujikura; Y. Takahashi; S. Ōmura; T. Nakashima
Erratum: New metabolites, sarcopodinols A and B, isolated from deep-sea derived fungal strain Sarcopodium sp. FKJ-0025 (Bioscience, Biotechnology, and Biochemistry (2018) DOI: 10.1080/09168451.2018.1467264)
Bioscience, Biotechnology and Biochemistry, 2019
83, 11, 2173 - Akinori Yabuki; Yangtsho Gyaltshen; Aaron A Heiss; Katsunori Fujikura; Eunsoo Kim
Ophirina amphinema n. gen., n. sp., a New Deeply Branching Discobid with Phylogenetic Affinity to Jakobids.
Scientific reports, 01 Nov. 2018
8, 1, 16219, 16219
[Reviewed] - Hirotaka Matsuo; Kenichi Nonaka; Yuriko Nagano; Akinori Yabuki; Katsunori Fujikura; Yōko Takahashi; Satoshi Ōmura; Takuji Nakashima
New metabolites, sarcopodinols A and B, isolated from deep-sea derived fungal strain Sarcopodium sp. FKJ-0025.
Bioscience, biotechnology, and biochemistry, Aug. 2018
82, 8, 1323, 1326
[Reviewed] - Orr RJS; Zhao S; Klaveness D; Yabuki A; Ikeda K; Watanabe MM; Shalchian-Tabrizi K
Correction to: Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution.
BMC evolutionary biology, Aug. 2018
18, 1, 118
[Reviewed] - Yabuki A; Ishida KI
An Orphan Protist Quadricilia rotundata Finally Finds Its Phylogenetic Home in Cercozoa.
The Journal of eukaryotic microbiology, Jul. 2018
65, 5, 729, 732
[Reviewed] - Orr RJS; Zhao S; Klaveness D; Yabuki A; Ikeda K; Watanabe MM; Shalchian-Tabrizi K
Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution.
BMC evolutionary biology, Jul. 2018
18, 1, 115
[Reviewed] - Kevin C. Wakeman; Akinori Yabuki; Katsunori Fujikura; Ko Tomikawa; Takeo Horiguchi
Molecular Phylogeny and Surface Morphology of Thiriotia hyperdolphinae n. sp. and Cephaloidophora oradareae n. sp. (Gregarinasina, Apicomplexa) Isolated from a Deep Sea Oradarea sp. (Amphipoda) in the West Pacific
Journal of Eukaryotic Microbiology, 01 May 2018
65, 3, 372, 381
[Reviewed] - Daria Tashyreva; Galina Prokopchuk; Akinori Yabuki; Binnypreet Kaur; Drahomíra Faktorová; Jan Votýpka; Chiho Kusaka; Katsunori Fujikura; Takashi Shiratori; Ken-Ichiro Ishida; Aleš Horák; Julius Lukeš
Phylogeny and Morphology of New Diplonemids from Japan
Protist, 01 Apr. 2018
169, 2, 158, 179
[Reviewed] - Daria Tashyreva; Galina Prokopchuk; Jan Votýpka; Akinori Yabuki; Aleš Horák; Julius Lukeš
Life Cycle, Ultrastructure, and Phylogeny of New Diplonemids and Their Endosymbiotic Bacteria.
mBio, 06 Mar. 2018
9, 2
[Reviewed] - Matthew W Brown; Aaron A Heiss; Ryoma Kamikawa; Yuji Inagaki; Akinori Yabuki; Alexander K Tice; Takashi Shiratori; Ken-Ichiro Ishida; Tetsuo Hashimoto; Alastair G. B. Simpson; Andrew J. Roger
Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group
Genome Biology and Evolution, 01 Feb. 2018
10, 2, 427, 433
[Reviewed] - Tashyreva, Daria; Prokopchuk, Galina; Yabuki, Akinori; Kaur, Binnypreet; Faktorová, Drahomíra; Votýpka, Jan; Kusaka, Chiho; Fujikura, Katsunori; Shiratori, Takashi; Ishida, Ken-Ichiro; Horák, Aleš; Lukeš, Julius
Phylogeny and Morphology of New Diplonemids from Japan
Protist, Feb. 2018
169, 2, 158, 179
[Reviewed] - Michelle M. Leger; Martin Kolisko; Ryoma Kamikawa; Courtney W. Stairs; Keitaro Kume; Ivan Cepicka; Jeffrey D. Silberman; Jan O. Andersson; Feifei Xu; Akinori Yabuki; Laura Eme; Qianqian Zhang; Kiyotaka Takishita; Yuji Inagaki; Alastair G. B. Simpson; Tetsuo Hashimoto; Andrew J. Roger
Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes
NATURE ECOLOGY & EVOLUTION, Apr. 2017
1, 4, 0092
[Reviewed] - Yuki Nishimura; Goro Tanifuji; Ryoma Kamikawa; Akinori Yabuki; Tetsuo Hashimoto; Yuji Inagaki
Mitochondrial Genome of Palpitomonas bilix: Derived Genome Structure and Ancestral System for Cytochrome c Maturation
GENOME BIOLOGY AND EVOLUTION, Oct. 2016
8, 10, 3090, 3098
[Reviewed] - Yabuki A; Tanifuji G; Kusaka C; Takishita K; Fujikura K
Hyper-eccentric structural genes in the mitochondrial genome of the algal parasite Hemistasia phaeocysticola.
Genome biology and evolution, Aug. 2016
[Reviewed] - Fumiya Noguchi; Shigeru Shimamura; Takuro Nakayama; Euki Yazaki; Akinori Yabuki; Tetsuo Hashimoto; Yuji Inagaki; Katsunori Fujikura; Kiyotaka Takishita
Metabolic Capacity of Mitochondrion-related Organelles in the Free-living Anaerobic Stramenopile Cantina marsupialis
PROTIST, Nov. 2015
166, 5, 534, 550
[Reviewed] - Naoji Yubuki; Tomas Panek; Akinori Yabuki; Ivan Cepicka; Kiyotaka Takishita; Yuji Inagaki; Brian S. Leander
Morphological Identities of Two Different Marine Stramenopile Environmental Sequence Clades: Bicosoeca kenaiensis (Hilliard, 1971) and Cantina marsupialis (Larsen and Patterson, 1990) gen. nov., comb. nov.
JOURNAL OF EUKARYOTIC MICROBIOLOGY, Jul. 2015
62, 4, 532, 542
[Reviewed] - Akinori Yabuki; Akihiro Tame
Phylogeny and Reclassification of Hemistasia phaeocysticola (Scherffel) Elbrachter & Schnepf, 1996
JOURNAL OF EUKARYOTIC MICROBIOLOGY, May 2015
62, 3, 426, 429
[Reviewed] - Masaaki Konishi; Shinro Nishi; Tokuma Fukuoka; Dai Kitamoto; Tomo-o Watsuji; Yuriko Nagano; Akinori Yabuki; Satoshi Nakagawa; Yuji Hatada; Jun-ichi Horiuchi
Deep-sea Rhodococcus sp BS-15, Lacking the Phytopathogenic fas Genes, Produces a Novel Glucotriose Lipid Biosurfactant
MARINE BIOTECHNOLOGY, Aug. 2014
16, 4, 484, 493
[Reviewed] - Akinori Yabuki; Takashi Toyofuku; Kiyotaka Takishita
Lateral transfer of eukaryotic ribosomal RNA genes: an emerging concern for molecular ecology of microbial eukaryotes
ISME JOURNAL, Jul. 2014
8, 7, 1544, 1547
[Reviewed] - Akinori Yabuki; Ryoma Kamikawa; Sohta A. Ishikawa; Martin Kolisko; Eunsoo Kim; Akifumi S. Tanabe; Keitaro Kume; Ken-ichiro Ishida; Yuji Inagki
Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista
SCIENTIFIC REPORTS, Apr. 2014
4, 4641
[Reviewed] - Ryoma Kamikawa; Martin Kolisko; Yuki Nishimura; Akinori Yabuki; Matthew W. Brown; Sohta A. Ishikawa; Ken-ichiro Ishida; Andrew J. Roger; Tetsuo Hashimoto; Yuji Inagaki
Gene Content Evolution in Discobid Mitochondria Deduced from the Phylogenetic Position and Complete Mitochondrial Genome of Tsukubamonas globosa
GENOME BIOLOGY AND EVOLUTION, 2014
6, 2, 306, 315
[Reviewed] - Akinori Yabuki; Wenche Eikrem; Kiyotaka Takishita; David J. Patterson
Fine Structure of Telonema subtilis Griessmann, 1913: A Flagellate with a Unique Cytoskeletal Structure Among Eukaryotes
PROTIST, Jul. 2013
164, 4, 556, 569
[Reviewed] - Akinori Yabuki; Ken-Ichiro Ishida; Thomas Cavalier-Smith
Rigifila ramosa n. gen., n. sp., a Filose Apusozoan with a Distinctive Pellicle, is Related to Micronuclearia
PROTIST, Jan. 2013
164, 1, 75, 88
[Reviewed] - David Bass; Akinori Yabuki; Sebastien Santini; Sarah Romac; Cedric Berney
Reticulamoeba Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases
PLOS ONE, Dec. 2012
7, 12, e49090
[Reviewed] - Takashi Shiratori; Akinori Yabuki; Ken-Ichiro Ishida
Esquamula lacrimiformis n. g., n. sp., a New Member of Thaumatomonads that Lacks Siliceous Scales
JOURNAL OF EUKARYOTIC MICROBIOLOGY, Nov. 2012
59, 6, 527, 536
[Reviewed] - Yoshiyuki Ishitani; Ryoma Kamikawa; Akinori Yabuki; Masashi Tsuchiya; Yuji Inagaki; Kiyotaka Takishita
Evolution of Elongation Factor-Like (EFL) Protein in Rhizaria is Revised by Radiolarian EFL Gene Sequences
JOURNAL OF EUKARYOTIC MICROBIOLOGY, Jul. 2012
59, 4, 367, 373
[Reviewed] - Akinori Yabuki; Ema E. Chao; Ken-Ichiro Ishida; Thomas Cavalier-Smith
Microheliella maris (Microhelida ord. n.), an Ultrastructurally Highly Distinctive New Axopodial Protist Species and Genus, and the Unity of Phylum Heliozoa
PROTIST, May 2012
163, 3, 356, 388
[Reviewed] - Kiyotaka Takishita; Martin Kolisko; Hiroshi Komatsuzaki; Akinori Yabuki; Yuji Inagaki; Ivan Cepicka; Pavla Smejkalova; Jeffrey D. Silberman; Tetsuo Hashimoto; Andrew J. Roger; Alastair G. B. Simpson
Multigene Phylogenies of Diverse Carpediemonas-like Organisms Identify the Closest Relatives of 'Amitochondriate' Diplomonads and Retortamonads
PROTIST, May 2012
163, 3, 344, 355
[Reviewed] - Kiyotaka Takishita; Yoshito Chikaraishi; Michelle M. Leger; Eunsoo Kim; Akinori Yabuki; Naohiko Ohkouchi; Andrew J. Roger
Lateral transfer of tetrahymanol-synthesizing genes has allowed multiple diverse eukaryote lineages to independently adapt to environments without oxygen
BIOLOGY DIRECT, Feb. 2012
7, 5
[Reviewed] - Akinori Yabuki; Takeshi Nakayama; Naoji Yubuki; Tetsuo Hashimoto; Ken-Ichiro Ishida; Yuji Inagaki
Tsukubamonas globosa n. gen., n. sp., a Novel Excavate Flagellate Possibly Holding a Key for the Early Evolution in "Discoba"
JOURNAL OF EUKARYOTIC MICROBIOLOGY, Jul. 2011
58, 4, 319, 331
[Reviewed] - Takuya Matsumoto; Fumihiko Shinozaki; Tomoko Chikuni; Akinori Yabuki; Kiyotaka Takishita; Masanobu Kawachi; Takeshi Nakayama; Isao Inouye; Tetsuo Hashimoto; Yuji Inagaki
Green-colored Plastids in the Dinoflagellate Genus Lepidodinium are of Core Chlorophyte Origin
PROTIST, Apr. 2011
162, 2, 268, 276
[Reviewed] - Akinori Yabuki; Ken-Ichiro Ishida
Mataza hastifera n. g., n. sp.: A Possible New Lineage in the Thecofilosea (Cercozoa)
JOURNAL OF EUKARYOTIC MICROBIOLOGY, Mar. 2011
58, 2, 94, 102
[Reviewed] - Ryoma Kamikawa; Akinori Yabuki; Takuro Nakayama; Ken-ichiro Ishida; Tetsuo Hashimoto; Yuji Inagaki
Cercozoa comprises both EF-1 alpha-containing and EFL-containing members
EUROPEAN JOURNAL OF PROTISTOLOGY, Jan. 2011
47, 1, 24, 28
[Reviewed] - Yabuki, A; Nakayama, T; Yubuki, N; Hashimoto, T; Ishida, K; Inagaki, Y
Tsukubamonas globosa gen. et sp. nov.; a novel excavate flagellate possibly hold a key for the early evolution in “Discoba”.
J. Euk. Microbiol., Jan. 2011
58, 2, 94-102
[Reviewed] - Ishida, Ken-ichiro; Yabuki, Akinori; Ota, Shuhei
Research note: Amorphochlora amoebiformis gen. et comb. nov. (Chlorarachniophyceae)
PHYCOLOGICAL RESEARCH, Jan. 2011
59, 1, 52, 53
[Reviewed] - Ishida, K-I; Inagaki, Y; Sakaguchi, M; Oiwa, A; Kai, A; Suzuki, M; Nakayama, T; Chikuni, T; Yabuki, A; Yamaguchi, H; Yubuki, N; Yoshida, M; Nakayama, T; Inouye, I; Hashimoto, T
Comprehensive SSU rRNA phylogeny of Eukaryota
J. Endocytobiosis Cell Res., Dec. 2010
20, 81-88
[Reviewed] - Naoji Yubuki; Vit Ceza; Ivan Cepicka; Akinori Yabuki; Yuji Inagaki; Takeshi Nakayama; Isao Inouye; Brian S. Leander
Cryptic Diversity of Free-Living Parabasalids, Pseudotrichomonas keilini and Lacusteria cypriaca n. g., n. sp., as Inferred from Small Subunit rDNA Sequences
JOURNAL OF EUKARYOTIC MICROBIOLOGY, Nov. 2010
57, 6, 554, 561
[Reviewed] - Akinori Yabuki; Yuji Inagaki; Ken-ichiro Ishida
Palpitomonas bilix gen. et sp nov.: A Novel Deep-branching Heterotroph Possibly Related to Archaeplastida or Hacrobia
PROTIST, Oct. 2010
161, 4, 523, 538
[Reviewed] - Martin Kolisko; Jeffrey D. Silberman; Ivan Cepicka; Naoji Yubuki; Kiyotaka Takishita; Akinori Yabuki; Brian S. Leander; Isao Inouye; Yuji Inagaki; Andrew J. Roger; Alastair G. B. Simpson
A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats
ENVIRONMENTAL MICROBIOLOGY, Oct. 2010
12, 10, 2700, 2710
[Reviewed] - David Bass; Ema E. -Y. Chao; Sergey Nikolaev; Akinori Yabuki; Ken-ichiro Ishida; Cedric Berney; Ursula Pakzad; Claudia Wylezich; Thomas Cavalier-Smith
Phylogeny of Novel Naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea Revised
PROTIST, Feb. 2009
160, 1, 75, 109
[Reviewed] - Shuhei Ota; Daniel Vaulot; Florence Le Gall; Akinori Yabuki; Ken-ichiro Ishida
Partenskyella glossopodia gen. et sp nov., the First Report of a Chlorarachniophyte that Lacks a Pyrenoid
PROTIST, Feb. 2009
160, 1, 137, 150
[Reviewed] - Tia D. Silver; Sayaka Koike; Akinori Yabuki; Rumiko Kofuji; John M. Archibald; Ken-Ichiro Ishida
Phylogeny and nucleomorph karyotype diversity of chlorarachniophyte algae
JOURNAL OF EUKARYOTIC MICROBIOLOGY, Sep. 2007
54, 5, 403, 410
[Reviewed] - Ken-Ichiro Ishida; Akinori Yabuki; Shuhei Ota
Chlorarachniophytes: Evolution and classification
Unravelling the Algae: The Past, Present, and Future of Algal Systematics, 01 Jan. 2007
171, 182
Misc.
- 谷藤吾朗; 松田真実; 吉田崇伸; 矢吹彬憲; 伊藤元雄; 石谷佳之; 野牧秀隆; 神川龍馬; 蓮沼誠久; 柏山祐一郎
非光合成クリプトモナスは炭素固定能力を維持する
日本寄生虫学会東日本支部大会プログラム・講演要旨, 2022
81st (Web) - 小栗一将; 土屋正史; 川村喜一郎; 村山雅史; 矢吹彬憲; 前田洋作; 野牧秀隆; 川口慎介; 中村明夢; 千葉早苗
Characteristics of surface sediments collected from Sagami bay, plate triple junction in Japan Trench, Izu-Bonin trench and the Pacific abyssal plain
日本地球惑星科学連合大会予稿集(Web), 2020
2020 - 中嶋亮太; 美山透; 北橋倫; 長野由梨子; 磯部紀之; 小栗一将; 生田哲朗; 吉田尊雄; RITCHIE Heather; 前田洋作; 山内拓也; 川村喜一郎; 鈴川真季; 青木邦弘; 土屋正史; 矢吹彬憲
災害による海洋ごみの大量流出 台風通過に伴うマイクロプラスチックの流出を例に
日本海洋学会大会講演要旨集(Web), 2020
2020 - 松尾洋孝; 松尾洋孝; 目代貴之; 野中健一; 野中健一; 長野由梨子; 矢吹彬憲; 藤倉克則; 庭野吉己; 高橋洋子; 大村智; 中島琢自; 中島琢自
深海由来糸状菌Penicillium sp.FKJ-0123株が生産する新規シンナモイルトリペプチドについて
日本農芸化学会大会講演要旨集(Web), 2019
2019 - 加山基; 野村真未; 後藤みなみ; 矢吹彬憲; 宮下英明; 真山茂樹; 神川龍馬
新規無色珪藻における葉緑体縮退進化
第2回日本共生生物学会, Nov. 2018 - 矢吹彬憲; 浦山俊一; 高木善弘; 横川太一; 松葉史紗子; 西真郎; 荒井渉; 平井美穂; 藤倉克則; 布浦拓郎
RNA-seqデータを活用した真核微生物群集構造の解明に向けた取り組み
ブルーアース要旨集, 2017
2017 - 廣瀬重之; 藤倉克則; 矢吹彬憲; 後藤慎平; 柴田桂; 川上創; 金井隆憲; 藤井友紀子; 武内境子; 児玉真弓; 小味亮介; 根本卓; 鈴木良博; 八巻鮎太; 山本智子
第17回「ハガキにかこう海洋の夢コンテスト」体験乗船
ブルーアース要旨集, 2016
2016 - 矢吹彬憲; 浦山俊一; 高木善弘; 西真郎; 横川太一; 荒井渉; 平井美穂; 藤倉克則; 布浦拓郎
RNA-seqデータを活用した真核微生物群集構造の解明に向けた取り組み
日本微生物生態学会大会(Web), 2016
31st - Matthew W Brown; Aaron A Heiss; Ryoma Kamikawa; Akinori Yabuki; Takashi Shiratori; Ken-ichiro Ishida; Yuji Inagaki; Alastair GB Simpson; Andrew J Roger
Phylogenemic placement of the orphaned amorphean protists; ancyromonads, mantamonads, collodictyonids, and rigifilids.
Protist2014, Aug. 2014 - 矢吹 彬憲
藻類学最前線 藻類進化における"空白の歴史"の解明を月指して : 157遺伝子解析よって明らかにされたPalpitomonasの系統的位置とクリプチスタの進化
藻類, 10 Jul. 2014
62, 2, 99, 102 - 矢吹彬憲; 豊福高志; 瀧下清貴
不等毛植物門ディクティオカ藻綱Ciliophrys infusionumのゲノム断片より見いだされたrRNA遺伝子の水平伝搬
日本植物学会大会研究発表記録, 20 Aug. 2013
77th, 125 - 神川 龍馬; 西村 祐貴; 矢吹 彬憲; Kolisko M; Simpson AGB; Roger AJ; 石田 健一郎; 橋本 哲男; 稲垣 祐司
新奇単細胞真核生物Tsukubamonas globosaの系統的位置とミトコンドリアゲノム
第35回日本分子生物学会, Dec. 2012 - Ryoma Kamikawa; Yabuki A; Hashimoto T; Nishimura Y; Inagaki Y
Searching for missing pieces in natural environments: With the emphasis on the importance of culture strains of enigmatic eukaryotes for global eukaryotic phylogeny.
JSME2012, Sep. 2012
[Invited] - Ryoma Kamikawa; Nishimura Y; Yabuki A; Kolisko M; Simpson AGB; Roger AJ; Ishida K; Hashimoto T; Inagaki Y
The phylogenetic position and mitochondrial genome sequence of the enigmatic discobid Tsukubamonas globosa
Protist2012, Aug. 2012 - Kolisko M; Ryoma Kamikawa; Takishita K; Cepi?ka I; Zhang Q; Hashimoto T; Yabuki A; Inagaki Y; Roger AJ; Simpson AGB
Evolutionary analysis of mitochondrial ancestry of diplomonads: Phylogenomics of mitochondrial-related organelles in Carpediemonas-like organisms.
Protist2012, Aug. 2012 - 石谷佳之; 石川奏太; 神川龍馬; 矢吹彬憲; 土屋正史; 稲垣祐司; 瀧下清貴
放散虫と有孔虫が互いに姉妹群であるとするレタリア仮説に基づくアクチン，チューブリン，ペプチド伸長因子の複雑な進化シナリオ
日本地球惑星科学連合2012年大会, May 2012 - Konishi Masaaki; Nagano Yuriko; Yabuki Akinori; Watsuji Tomo-o; Nakagawa Satoshi; Hatada Yuji
2Ba07 Isolation of novel biosurfactant-producing bacterium from the deep sea
日本生物工学会大会講演要旨集, 2012
64, 25, 25 - 稲垣祐司; 矢吹彬憲; 神川龍馬
新奇真核微生物からの大規模配列データで変貌し続ける、我々の真核生物大系統像
第31回微生物系統分類研究会, Nov. 2011
[Invited] - Akinori Yabuki; Ryoma Kamikawa; Martin Kolisko; Sohta A. Ishikawa; Ken- ichiro Ishida; Alastair G.B. Simpson; Andrew J. Roger; Yuji Inagaki
Tsukubamonas globosa is a deep-branching lineage in the Discoba clade: Morphology, phylogenomics, and mitochondrial genome.
International Union of Microbiological Societies 2011 Congress, Sep. 2011
[Invited] - 矢吹彬憲; 神川龍馬; Martin Kolisko; 石田健一郎; 田辺晶史; 橋本哲男; 稲垣祐司
159遺伝子データに基づく従属栄養性真核微生物Palpitomonas bilixの系統的位置
第5回日本進化原生生物学研究会, Jun. 2011 - 神川龍馬; 矢吹彬憲; Martin Kolisko; 西村祐貴; 石川奏太; 石田健一郎; 橋本哲男; Andrew J Roger; Alastair GB Simpson; 稲垣祐司
Tsukubamonas globosaのPhylogenomic解析と部分的ミトコンドリアゲノム配列
第5回日本進化原生生物学研究会, Jun. 2011 - 矢吹彬憲; 神川龍馬; Martin Kolisko; 田辺晶史; Andrew J. Roger; 橋本哲男; 石田健一郎; 稲垣祐司
所属不明原生生物Palpitomonas bilixの分子系統解析
第35回日本藻類学会, Mar. 2011 - 稲垣祐司; 矢吹彬憲; 神川龍馬; 西村祐貴; 石田健一郎; 橋本哲男
無色系統群の研究から炙り出される真核藻類の進化―ゲノミクスの視点を含めて
NBRP「藻類」シンポジウム『未来を支える藻類，その多様性―ゲノミクス・ポストゲノミクスの視点から』, Jan. 2011
[Invited] - 小松崎洋志; 稲垣祐司; 瀧下清貴; 古我友樹; 矢吹彬憲; 松本拓也; 神川龍馬; 雪吹直史; Martin Kolisko; Alastair Simpson; Andrew J Roger; 橋本哲男
複数遺伝子解析によるFornicata生物群における進化系統の解明.
第11回日本進化学会札幌大会, Sep. 2009 - 小松崎洋志; 稲垣祐司; 瀧下清貴; 古我友樹; 矢吹彬憲; 松本拓也; 神川龍馬; 雪吹直史; Martin Kolisko; Alastair Simpson; Andrew J Roger; 橋本哲男
複数遺伝子解析によるFornicata生物群の系統進化の解明
第4回日本進化原生生物学研究会, Jul. 2009 - 稲垣祐司; 佐藤夏紀; 古我友樹; 中山剛; 大田修平; 甲斐厚; 平川泰久; 千國友子; 中山卓郎; 野水美奈; 矢吹彬憲; 山口晴代; 遠藤寛子; 池上裕子; 雪吹直史; 橋本哲男; 渡邉信; 石田健一郎; 井上勲
霞ケ浦,磯ノ浦における真核微生物の分子多様性解析
藻類, 10 Mar. 2008
56, 1, 85 - 中山剛; 佐藤夏紀; 大田修平; 甲斐厚; 平川泰久; 千國友子; 中山卓郎; 野水美奈; 矢吹彬憲; 山口晴代; 遠藤寛子; 池上裕子; 古賀友樹; 雪吹直史; 稲垣祐司; 橋本哲男; 渡邊信; 石田健一郎; 井上勲
霞ケ浦のプロティスト相2007
藻類, 2008
56, 1
