Researcher Information
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Research activity information
Papers
- Yoshio Masuda; Maki Noguchi Aita; Sherwood Lan Smith; Amane Fujiwara; Eiji Watanabe; Hiroshi Sumata; Hideyuki Nakano; Yasuhiro Yamanaka
Photoacclimation contributes to Arctic primary production under sea ice and around the subsurface chlorophyll maximum
Communications Earth & Environment, 12 Jan. 2026
7, 158
[Reviewed] - Hanani Adiwira; Sayaka Yasunaka; Jamie M. Kass; Ays ̧e H. O. Ac; ̧ıkbas; Sekar Adiningsih; Emma Gairin; Hovaldo B.; C. Ilham; Elisa Lahcene; Yanguo Li; Gaku Nishihira; Paula Peñalver-Pereira; Florence M.; P. Sie; Charina Lyn; Amedo-Repollo; Cheryl L. Ames; David Armitage; Åke Brännström; Ulf Dieckmann; Toyonobu Fujii; Filip Husnik; Michio Kawamiya; Takako Masuda; Charles Plessy; Lauren Sallan; Teruhisa Shimada; Sherwood Lan Smith; Peter G. Strutton; Anindya Wirasatriya; Toshio Suga
Pathways to an integrated understanding of marine environments and ecosystems in the Asia-Pacific Region
FRONTIERS IN MARINE SCIENCE, Oct. 2025
12, 1680145
[Reviewed] - Sze-Wing To; Esteban Acevedo-Trejos; Sherwood Lan Smith; Subhendu Chakraborty; Agostino Merico
Ecological and environmental factors influencing exclusion patterns of phytoplankton size classes in lake systems
Ecological Complexity, Dec. 2024
61, 101115, 101115
[Reviewed] - Yoshio Masuda; Yasuhiro Yamanaka; Takafumi Hirata; Hideyuki Nakano; Akira Oka; Hiroshi Sumata; Maki Noguchi Aita
Acclimation by diverse phytoplankton species determines oceanic carbon to nitrogen ratios
Limnology and Oceanography Letters, Jun. 2023
519, 528 - Onur Kerimoglu; Markus Pahlow; Prima Anugerahanti
FABM-NflexPD 2.0: testing an instantaneous acclimation approach for modeling the implications of phytoplankton eco-physiology for the carbon and nutrient cycles
Geoscientific Model Development, 04 Jan. 2023
95, 108 - Yoshikazu Sasai; Eko Siswanto; Hideharu Sasaki; Masami Nonaka
Physiological flexibility of phytoplankton impacts modelled chlorophyll and primary production across the North Pacific Ocean
Biogeosciences, 19 Oct. 2022
4865, 4882 - Esteban Acevedo-Trejos; Mathilde Cadier; Subhendu Chakraborty; Bingzhang Chen; Shun Yan Cheung; Maria Grigoratou; Christian Guill; Christiane Hassenrück; Onur Kerimoglu; Toni Klauschies; Christian Lindemann; Artur Palacz; Alexey Ryabov; Marco Scotti; S. Lan Smith; Selina Våge; Friederike Prowe
Modelling approaches for capturing plankton diversity (MODIV), their societal applications and data needs
Frontiers in Marine Science, Aug. 2022
9 - Kai Wirtz; S. Lan Smith; Moritz Mathis; Jan Taucher
〔Major achievements〕Vertically migrating phytoplankton fuel high oceanic primary production
Nature Climate Change, Aug. 2022 - Anupam Priyadarshi; Ram Ch; ra; Michio J. Kishi; S.Lan Smith; Hidekatsu Yamazaki
Understanding plankton ecosystem dynamics under realistic micro-scale variability requires modeling at least three trophic levels
Ecological Modelling, 09 Mar. 2022
467, 109936, 109936 - Yoshio Masuda; Yasuhiro Yamanaka; Sherwood Lan Smith; Takafumi Hirata; Hideyuki Nakano; Akira Oka; Hiroshi Sumata
〔Major achievements〕Photoacclimation by phytoplankton determines the distribution of global subsurface chlorophyll maxima in the ocean
Communications Earth & Environment, 18 Jun. 2021
2, 1 - Anupam Priyadarshi; Ram Ch; ra; S. Lan Smith; Hidekatsu Yamazaki
Environmental heterogeneity enhances transfer efficiency in a model of the food chain from plankton to fish
Journal of Marine Systems, 26 Apr. 2021
220, 103555, 103555 - Guillaume Le Gland; Sergio M. Vallina; S. Lan Smith; Pedro Cerme; n } }o
〔Major achievements〕SPEAD 1.0 – Simulating Plankton Evolution with Adaptive Dynamics in a two-trait continuous fitness landscape applied to the Sargasso Sea
Geoscientific Model Development, 13 Apr. 2021
14, 4, 1949, 1985 - Sherwood Lan Smith
Enhancing Ocean Biogeochemical Models With Phytoplankton Variable Composition
Frontiers in Marine Science, 2021 - Sherwood Lan Smith
FABM-NflexPD 1.0: assessing an instantaneous acclimation approach for modeling phytoplankton growth
Geoscientific Model Development, 2021 - Carmen García-Comas; Chih-hao Hsieh; Sanae Chiba; Hiroya Sugisaki; Taketo Hashioka; S. Lan Smith
Contrasting species functional trait structuring of subarctic versus subtropical copepod communities
01 Feb. 2020 - Sherwood Lan Smith
Vertical migration by bulk phytoplankton sustains biodiversity and nutrient input to the surface ocean
Scientific Reports, 24 Jan. 2020 - Chen, B.; Masunaga, E.; Smith, S.L.; Yamazaki, H.
Diel vertical migration promotes zooplankton horizontal patchiness
Journal of Oceanography, 2020 - Anupam Priyadarshi; S. Lan Smith; Sandip Mandal; Mamoru Tanaka; Hidekatsu Yamazaki
Micro-scale patchiness enhances trophic transfer efficiency and potential plankton biodiversity
Scientific Reports, 21 Nov. 2019 - Chen, B.; Smith, S.L.; Wirtz, K.W.
〔Major achievements〕Effect of phytoplankton size diversity on primary productivity in the North Pacific: trait distributions under environmental variability
Ecology Letters, 2019
22, 1 - M; al, S.; Lan Smith, S.; Priyadarshi, A.; Yamazaki, H.
Micro-scale variability impacts the outcome of competition between different modeled size classes of phytoplankton
Frontiers in Marine Science, 2019
6, May - Vallina, S.M.; Martinez-Garcia, R.; Smith, S.L.; Bonachela, J.A.
Models in microbial ecology
Encyclopedia of Microbiology, 2019 - Bingzhang Chen; Sherwood Lan Smith
Optimality-based approach for computationally efficient modeling of phytoplankton growth, chlorophyll-to-carbon, and nitrogen-to-carbon ratios
Ecological Modelling, 10 Oct. 2018
385
Last - Bingzhang Chen; S. Lan Smith
CITRATE 1.0: Phytoplankton continuous trait-distribution model with one-dimensional physical transport applied to the Northwest Pacific
Geoscientific Model Development, 02 Jun. 2017
11, 1 - Honda, Makio C.; Wakita, Masahide; Matsumoto, Kazuhiko; Fujiki, Tetsuichi; Siswanto, Eko; Sasaoka, Kosei; Kawakami, Hajime; Mino, Yoshihisa; Sukigara, Chiho; Kitamura, Minoru; Sasai, Yoshikazu; Smith, Sherwood L.; Hashioka, Taketo; Yoshikawa, Chisato; Kimoto, Katsunori; Watanabe, Shuichi; Kobari, Toru; Nagata, Toshi; Hamasaki, Koji; Kaneko, Ryo; Uchimiya, Mario; Fukuda, Hideki; Abe, Osamu; Saino, Toshiro
Comparison of carbon cycle between the western Pacific subarctic and subtropical time-series stations: highlights of the K2S1 project
Journal of Oceanography, 2017
73, 5 - Priyadarshi, Anupam; Mandal, Sandip; Smith; S. Lan; Yamazaki, Hidekatsu
Micro-scale variability enhances trophic transfer and potentially sustains biodiversity in plankton ecosystems
Journal of Theoretical Biology, 2017
412 - Esteban Acevedo-Trejos; Gunnar Brandt; S. Lan Smith; Agostino Merico
PhytoSFDM version 1.0.0: Phytoplankton Size and Functional Diversity Model
Geoscientific Model Development, 14 Nov. 2016
9, 11 - Smith; S. Lan; Vallina; Sergio M.; Merico, Agostino
Phytoplankton size-diversity mediates an emergent trade-off in ecosystem functioning for rare versus frequent disturbances
Scientific Reports, 2016
6 - Smith; S. Lan; Pahlow, Markus; Merico, Agostino; Acevedo-Trejos; Esteban; Sasai, Yoshikazu; Yoshikawa, Chisato; Sasaoka, Kosei; Fujiki, Tetsuichi; Matsumoto, Kazuhiko; Honda; Makio C.
Contribution to the Themed Section: Advances in Plankton Modelling and Biodiversity Evaluation Flexible phytoplankton functional type (FlexPFT) model: size-scaling of traits and optimal growth
Journal of Plankton Research, 2016
38, 4 - Yamazaki, Hidekatsu; Smith, S. Lan
Introduction to the Themed Section: Advances in Plankton Modelling and Biodiversity Evaluation INTRODUCTION Advances in plankton modeling and biodiversity evaluation
Journal of Plankton Research, 2016
38, 4 - Sasai, Yoshikazu; Yoshikawa, Chisato; Smith, S. Lan; Hashioka, Taketo; Matsumoto, Kazuhiko; Wakita, Masahide; Sasaoka, Kosei; Honda, Makio C.
Coupled 1-D physical-biological model study of phytoplankton production at two contrasting time-series stations in the western North Pacific
Journal of Oceanography, 2016
72, 3 - Mandal, Sandip; Homma, Hikaru; Priyadarshi, Anupam; Burchard, Hans; Smith, S. Lan; Wirtz, Kai W.; Yamazaki, Hidekatsu
Contribution to the Themed Section: Advances in Plankton Modelling and Biodiversity Evaluation A 1D physical-biological model of the impact of highly intermittent phytoplankton distributions
Journal of Plankton Research, 2016
38, 4 - Smith; S. Lan; Merico, Agostino; Hohn, Soenke; Brandt, Gunnar
Sizing-up nutrient uptake kinetics: combining a physiological trade-off with size-scaling of phytoplankton traits
Marine Ecology Progress Series, 2014
511 - Merico, A.; Br; t, G.; Smith, S.L.; Oliver, M.
Sustaining diversity in trait-based models of phytoplankton communities
Frontiers in Ecology and Evolution, 2014
2, OCT - Smith, S. Lan; Merico, Agostino; Wirtz, Kai W.; Pahlow, Markus
Leaving misleading legacies behind in plankton ecosystem modelling
Journal of Plankton Research, 2014
36, 3 - Acevedo-Trejos, Esteban; Brandt, Gunnar; Merico, Agostino; Smith; S. Lan
Biogeographical patterns of phytoplankton community size structure in the oceans
Global Ecology and Biogeography, 2013
22, 9 - Chikamoto, M.O.; Abe-Ouchi, A.; Oka, A.; Smith, S.L.
Temperature-induced marine export production during glacial period
Geophysical Research Letters, 2012
39, 21 - Shigemitsu, M.; Okunishi, T.; Nishioka, J.; Sumata, H.; Hashioka, T.; Aita, M.N.; Smith, S.L.; Yoshie, N.; Okada, N.; Yamanaka, Y.
Development of a one-dimensional ecosystem model including the iron cycle applied to the Oyashio region, western subarctic Pacific
Journal of Geophysical Research C: Oceans, 2012
117, 6 - Smith, S. L.; Pahlow, M.; Merico, A.; Wirtz, K. W.
〔Major achievements〕Optimality-based modeling of planktonic organisms
Limnology and Oceanography, 2011
56, 6 - Smith, S.L.
Consistently modeling the combined effects of temperature and concentration on nitrate uptake in the ocean
Journal of Geophysical Research G: Biogeosciences, 2011
116, 4 - Aita, M.N.; Tadokoro, K.; Ogawa, N.O.; Hyodo, F.; Ishii, R.; Smith, S.L.; Saino, T.; Kishi, M.J.; Saitoh, S.-I.; Wada, E.
Linear relationship between carbon and nitrogen isotope ratios along simple food chains in marine environments
Journal of Plankton Research, 2011
33, 11 - Smith, S. Lan; Yoshie, Naoki; Yamanaka, Yasuhiro
Physiological acclimation by phytoplankton explains observed changes in Si and N uptake rates during the SERIES iron-enrichment experiment
Deep-Sea Research Part I-Oceanographic Research Papers, 2010
57, 3 - Rose, K. A.; Allen, J. I.; Artioli, Y.; Barange, M.; Blackford, J.; Carlotti, F.; Cropp, R.; Daewel, U.; Edwards, K.; Flynn, K.; Hill, S. L.; HilleRisLambers, R.; Huse, G.; Mackinson, S.; Megrey, B.; Moll, A.; Rivkin, R.; Salihoglu, B.; Schrum, C.; Shannon, L.; Shin, Y. J.; Smith, S. L.; Smith, C.; Solidoro, C.; St John, M.; Zhou, M.
End-To-End Models for the Analysis of Marine Ecosystems: Challenges, Issues, and Next Steps
Marine and Coastal Fisheries, 2010
2, 1 - Smith, S. Lan
Untangling the uncertainties about combined effects of temperature and concentration on nutrient uptake rates in the ocean
Geophysical Research Letters, 2010
37 - Smith, S.L.; Yamanaka, Y.; Pahlow, M.; Oschlies, A.
Optimal uptake kinetics: Physiological acclimation explains the pattern of nitrate uptake by phytoplankton in the ocean
Marine Ecology Progress Series, 2009
384 - Niraula, M. P.; Casareto, B. E.; Smith, S. L.; Hanai, T.; Suzuki, Y.
Examining the effects of nutrients on the composition and size of phytoplankton using unaltered deep-sea waters
Journal of Experimental Marine Biology and Ecology, 2007
348, 1-2 - Megrey, B. A.; Rose, K. A.; Klumb, R. A.; Hay; D. E.; Werner, F. E.; Eslinger, D. L.; Smith, S. L.
A bioenergetlics-based population dynamics model of Pacific herring (Clupea harengus pallasi) coupled to a lower trophic level nutrient-phytoplankton-zooplankton model: Description, calibration, and sensitivity analysis
Ecological Modelling, 2007
202, 1-2 - Kishi, M.J.; Kashiwai, M.; Ware, D.M.; Megrey, B.A.; Eslinger, D.L.; Werner, F.E.; Noguchi-Aita, M.; Azumaya, T.; Fujii, M.; Hashimoto, S.; Huang, D.; Iizumi, H.; Ishida, Y.; Kang, S.; Kantakov, G.A.; Kim, H.-c.; Komatsu, K.; Navrotsky, V.V.; Smith, S.L.; Tadokoro, K.; Tsuda, A.; Yamamura, O.; Yamanaka, Y.; Yokouchi, K.; Yoshie, N.; Zhang, J.; Zuenko, Y.I.; Zvalinsky, V.I.
NEMURO-a lower trophic level model for the North Pacific marine ecosystem
Ecological Modelling, 2007
202, 1-2 - Smith, S.L.; Yamanaka, Y.
Quantitative comparison of photoacclimation models for marine phytoplankton
Ecological Modelling, 2007
201, 3-4 - Smith, S.L.; Yamanaka, Y.
Optimization-based model of multinutrient uptake kinetics
Limnology and Oceanography, 2007
52, 4 - Smith, S.L.; Casareto, B.E.; Niraula, M.P.; Suzuki, Y.; Hargreaves, J.C.; Annan, J.D.; Yamanaka, Y.
Examining the regeneration of nitrogen by assimilating data from incubations into a multi-element ecosystem model
Journal of Marine Systems, 2007
64, 1-4 - Lan Smith, S.; Yamanaka, Y.; Kishi, M.J.
Attempting consistent simulations of Stn. ALOHA with a multi-element ecosystem model
Journal of Oceanography, 2005
61, 1 - Smith, S. L.; Jaffe, P. R.
Modeling the transport and reaction of trace metals in water-saturated soils and sediments
Water Resources Research, 1998
34, 11
Misc.
- 増田良帆; 野口真希; SMITH S. Lan; 山中康裕; 中野英之
亜表層クロロフィル極大を再現できるモデルを用いた一次生産の鉛直分布の解析
日本海洋学会大会講演要旨集(Web), 2022
2022
Presentations
- Sherwood Lan Smith
Combining observations and models to better understand the adaptive capacity of phytoplankton communities in the subtropical ocean
AIMEC All-hands Meeting, University of Hawaii, 19 Mar. 2026 - Sherwood Lan Smith; Yoshio Masuda; Taketo Hashioka; Maki N. Aita; Ettore Barbieri
Understanding Variability and Trends of Chlorophyll and Primary Production at Time- series Observation Sites
Ocean Sciences Meeting 2026, 26 Feb. 2026 - Sherwood Lan Smith
Research in the Marine Ecosystem Modeling and Evaluation (MEME) Research Unit at WPI-AIMEC
AIMEC-OIST Joint Workshop, OIST, Okinawa, 21 Nov. 2025 - Sherwood Lan Smith; Yoshio Masuda; Taketo Hashioka; Maki N. Aita
Variability of Chlorophyll and Primary Production at Time-series Observation Sites
JpGU Annual Meeting 2025, 29 May 2025 - Sherwood Lan Smith
Modeling Calcification by Marine Plankton
CREST C-LIFE Project Workshop, JAMSTEC, Mutsu, 25 May 2025 - Sherwood Lan Smith
Marine Ecosystem Modeling Research Unit at WPI-AIMEC
AIMEC All-hands Meeting, JAMSTEC, Yokosuka and Yokohama, 17 Mar. 2025 - Sherwood Lan Smith
Marine Ecosystem Modeling Research at AIMEC: Acclimation, Adaptation, and Complexity
AIMEC Workshop, University of Hawaii, Honolulu, USA, 05 Mar. 2025 - Sherwood Lan Smith; Yoshio Masuda; Taketo Hashioka; Maki N. Aita
Variability of Chlorophyll and Primary Production at Time-series Observation Sites
Japan Oceanographic Society Fall Meeting 2024, Tokyo, 17 Sep. 2024 - Sherwood Lan Smith
Rising to the Challenges of Modeling Marine Ecosystems: Acclimation, Adaptation, and Complexity
JpGU 2024 Annual Meeting, Makuhari Messe, Chiba, Japan, 27 May 2024, [Invited] - Sherwood Lan Smith
Marine Ecosystem Modeling: How can it be useful to society?
2nd UN Ocean Decade Regional Conference & 11th WESTPAC International Marine Science Conference, Bangkok, Thailand, 24 Apr. 2024 - Sherwood Lan Smith; Yoshio Masuda; Taketo Hashioka; Maki N. Aita
Physiological flexibility under environmental variability: modeled phytoplankton response at five ocean observation sites
Ocean Science Meeting 2024, New Orleans, USA, 21 Feb. 2024
