JAMSTEC > Research Institute for Global Change (RIGC) > Marine Biodiversity and Environmental Assessment Research Center (BioEnv) > Publications

publications

Publications

FY2025

Vanderhorstia supersaiyan sp. nov. (Perciformes: Gobiidae) collected from the twilight zone off Ishigaki-jima Island, Okinawa, Japan

A new species of goby fish Vanderhorstia supersaiyan sp. nov. (Perciformes: Gobiidae) was discovered in deep water near Okinawa, Japan. It was found at 210 meters depth and is easily recognized by its bright yellow stripes and markings. Unlike its close relatives, which live in shallow water, this fish lives in the ocean’s “twilight zone,” showing that this little-studied deep habitat still holds many undiscovered species.

Keita Koeda, Hiroshi Hirasaka, Mao Sato (2025) Vanderhorstia supersaiyan sp. nov. (Perciformes: Gobiidae) collected from the twilight zone off Ishigaki-jima Island, Okinawa, Japan, Ichthyological Research, 27 November 2025, 10.1007/s10228-025-01047-6

Records of some deep-sea corals (Antipatharia and Octocorallia) from the Daito Islands, Okinawa, Japan

This study reports the first observations of deep-sea corals around Daito Islands in Okinawa, Japan. The corals were found at depths of 200–1,000 meters, including a black coral species recorded in this region for the first time. These findings highlight the importance of further research and protection of deep-sea habitats in this area.

Kurt Bryant B. Bacharo, Kylie Villareal, Hiroki Kise, Asuka Sentoku, Hiroyuki Yokooka, Shinji Tsuchida, Yoshihiro Fujiwara, James Davis Reimer, Records of some deep-sea corals (Antipatharia and Octocorallia) from the Daito Islands, Okinawa, Japan, Marine Biological Association of the United Kingdom, Volume 105, 2025, e127, 10.1017/S0025315425100817

A bioluminescent deep-sea polychaete within the genus Aricidea (Paraonidae) from Minamidaito Island, Japan

This study reports the discovery of a deep-sea polychaete that emits green light when stimulated.　The worm was found near Minamidaito Island in the Pacific Ocean and belongs to the genus Aricidea. Genetic analysis suggests it may be an undescribed species, marking the first report of bioluminescence in its family.

Manabu Bessho-Uehara, Naoto Jimi, Yoshihiro Fujiwara (2025) A bioluminescent deep-sea polychaete within the genus Aricidea (Paraonidae) from Minamidaito Island, Japan, Scientific Reports volume 15, Article number: 36573 (2025) , 10.1038/s41598-025-20544-2

Genomic sequences of free-living Pseudoalteromonas species isolated from seawater using an ethylene-α-olefin co-oligomer as a sole carbon source

This study reports two marine bacteria isolated from seawater using a plastic-like compound as their only food source. Their genomes were analyzed, providing clues about how bacteria interact with polyolefin materials, even though they lack known genes for breaking them down.

Ryo Iizuka, Takao Yoshida, Masaru Kawato, Yoshihiro Fujiwara, Sotaro Uemura (2025)Genomic sequences of free-living Pseudoalteromonas species isolated from seawater using an ethylene-α-olefin co-oligomer as a sole carbon source, Microbiol Resour Announc., 10.1128/mra.00785-25

Glow in the D-ARK: a new bioluminescent species of Corallizoanthus (Anthozoa: Zoantharia: Parazoanthidae) from southern Japan

A new species of zoantharian, Corallizoanthus aureus, was discovered in and around a deep-sea cave in the Daito Islands, Japan. During the research expedition, we successfully obtained ROV footage showing this species emitting light in response to stimulation. This represents the first documented observation of bioluminescence within a deep-sea cave anywhere in the world. The specific name derives from ‘aureus’ meaning ‘golden’ in Latin.

Hiroki Kise, Manabu Bessho-Uehara, Kenta C. F. Kondo, Kiko Shimoji, Shohei Ito, Shinji Tsuchida, Yoshihiro Fujiwara, and James D. Reimer(2025) Glow in the D-ARK: a new bioluminescent species of Corallizoanthus (Anthozoa: Zoantharia: Parazoanthidae) from southern Japan, Royal Society Open Access, Published:05 November 2025, DOI: https://doi.org/10.1098/rsos.250890

New deep-sea terebellid polychaete with sucker like ventral pads adapted to a sediment free environment

A new species of terebellid polychaete, Lanice spongicola, is described from deep-sea sponges in the northwestern Pacific Ocean off Minamidaito Island, Okinawa, Japan. This species is associated with the sponge Walteria cf. leuckarti at a depth of 843 m.
The anterior area of ventral pad is used as an adhesion organ, facilitating attachment to the host sponge. This terebellid species differs from the typical sediment-dwelling lifestyle, having adapted to a sediment-free environment through its association with sponges and the development of specialized sucker structures for attachment.

Naoto Jimi, Geminne G. Manzano, Natsumi Hookabe, Hiroki Kise, James Davis Reimer, Sau Pinn Woo, Yoshihiro Fujiwara（2025）New deep sea terebellid polychaete with sucker like ventral pads adapted to a sediment free environment, Sci Rep 15, 36307 (2025), DOI：https://doi.org/10.1038/s41598-025-23333-z

Research paper

Ribbon worms living on deep-sea trees: Alvinonemertes daitoensis sp. nov. (Nemertea, Monostilifera) associated with the glass sponge Walteria leuckarti (Porifera, Hexactinellida)

We discovered a new species of nemertean, Alvinonemertes daitoensis sp. nov., at a depth of 843 meters northwest of Minamidaito Island, Japan. This species is closely associated with the hexactinellid glass sponge Walteria leuckarti. It shows a distinctive ecological behavior, wrapping around the branches of its host sponge, similar to Alvinonemertes dariae and Sagornya dagmarae, suggesting convergent arboreal adaptations to tree- shaped host animals. The Japanese name of the species is “Daito Kinobori Himomushi,” based on this unique lifestyle.

Natsumi Hookabe, Geminne G. Manzano, Naoto Jimi, Hiroki Kise, James Davis Reimer, Shinji Tsuchida & Yoshihiro Fujiwara (2025) Ribbon worms living on deep-sea trees: Alvinonemertes daitoensis sp. nov. (Nemertea, Monostilifera) associated with the glass sponge Walteria leuckarti (Porifera, Hexactinellida), Systematics and Biodiversity, 23:1, 2504484, DOI:10.1080/14772000.2025.2504484

FY2024

Research paper

First northwestern Pacific records of the deep-sea cardinalfish Epigonus glossodontus (Teleostei, Epigonidae) from the Daito Islands, Japan

The deep-sea cardinalfish Epigonus glossodontus Gon, 1985, previously known only from the Hawaiian Islands, was observed on steep seafloors surrounding Kitadaito and Minamidaito islands, both being oceanic islands belonging to the Daito Islands, Japan in the northwestern Pacific. Sparse populations were mainly observed at depths of 340–588 m, around or within small caves, fissures, and recesses. A glossy bluish-green body color with black-margined scales was revealed by the field observations, the glossy color fading immediately after death. Its Japanese name is "ホラアナヒスイヤセムツ"(Horaanahisui-yasemutsu, meaning "cave jade deep-sea cardinalfish").

Mao Sato, Shohei Ito, Yoshihiro Fujiwara, Keita Koeda(2025). “First northwestern Pacific records of the deep-sea cardinalfish Epigonus glossodontus (Teleostei, Epigonidae) from the Daito Islands, Japan” Zookeys 1231:1-10 DOI: 10.3897/zookeys.1231.136445
University of the Ryukyus Official Website: https://www.u-ryukyu.ac.jp/news/64937/

A New Species of Flabelligena (Annelida: Acrocirridae) from the Western Pacific

We discovered a new species of polychaete worm, Flabelligena daitoensis, belonging to the family Acrocirridae. This species is the first to be described from the Pacific Ocean. This species inhabits sandy environments at depths of 644 to 774 meters. The polychaete genus Flabelligena has previously been described from the Atlantic, Mediterranean, Indian, and Antarctic oceans.
The specific name daitoensis is derived from the fact that this species was first discovered near Minamidaito Island. Its Japanese name is "ダイトウヒメクマノアシツキ" (Daito-hime-kumanoashitsuki).

Naoto Jimi, Natsumi Hookabe, Shoki Shiraki, Hiroyuki Yokooka, Sau Pinn Woo, Shinji Tsuchida, and Yoshihiro Fujiwara (2024). “A New Species of Flabelligena (Annelida: Acrocirridae) from the Western Pacific." Species Diversity, 29(2), 415–421. DOI: 10.12782/specdiv.29.415

Presentations

Bergman LA, Koeda K, Reimer JD, Sentoku A, Chris M, Yokooka H, Sato M, Bacharo KBB, Tsuchida S, Fujiwara Y (2025) Diversity across the Philippine Sea: benthic megafauna community composition across four ridges in southern Japan. 17th Deep-Sea Biology Symposium
Received the Early-Career Research Award

Bergman LA, Koeda K, Reimer JD, Sentoku A, Yokooka H, Sato M, Bacharo KBB, Tsuchida S, Fujiwara Y (2025) Examining benthic megafauna community composition across four ridges in the Philippine Sea. JAMSTEC International Day 2025

Hookabe N, Fujiwara Y (2025) Ribbon worms from hydrothermal vent fields and seamounts. 17th Deep-Sea Biology Symposium
Received the Early-Career Research Award

Bacharo KBB, Lalas JA, Hakim AA, Fourreau CHL, Kise H, Sentoku A, Yokooka H, Hookabe N, Horowitz J, Tsuchida S, Fujiwara Y, Reimer JD. Nippon’s marine jewels: Preliminary findings on black corals (Antipatharia) of southern Japan. The 27th Annual Meeting of the Japanese Coral Reef Society

Bacharo KBB, Villareal K, Kise H, Sentoku A, Yokooka H, Horowitz J, Hookabe N, Tsuchida S, Fujiwara Y, Reimer JD (2025) Illuminating the diversity of deep-sea anthozoans found in selected sites of the Northwestern Pacific. 17th Deep-Sea Biology Symposium

Bacharo KBB, Villareal K, Monroy MPM, Kise H, Sentoku A, Yokooka H, Hookabe N, Horowitz J, Tsuchida S, Fujiwara Y, Reimer JD (2025) Diversity and distribution of anthozoan specimens collected during the 2020-2024 JAMSTEC expeditions in the northwestern Pacific. Ocean and Earth Symposium 2024

Fujiwara Y, Kawato M, Yoshida T, Tsuchida S, Hookabe N, Bergman L, Koeda K, Sentoku A, Reimer JD, Bacharo, KBB, Jimi N, Bessho-Uehara M, Yamanaka T, Shiraki S, Sato M, Kise H, Yamaki A, Ohno A, Yokooka H, Ito S, Mitsufuji K, Koyama Y, Yasuda T, Okamura G, Vendetti Jann, Sugimoto Y, Shinomiya Y, Tun HA, Fujioka R (2025) Overview of KM24-03 Leg 2 Cruise. Ocean and Earth Symposium 2024 (in Japanese)

Fujiwara Y (2024) Introduction to Deep-Sea Biology. Special Lecture on Life Sciences. Aoyama Gakuin University. (in Japanese)

Koeda K, Sato M, Ito S, Ohno A, Bergman L, Tsuchida S, Fujiwara Y (2024) The fish fauna of deep-sea karst in the Daito Islands. The 2024 (59th) Annual Meeting of the Ichthyological Society of Japan (in Japanese)

Misato Sako, Yoshihiro Fujiwara, Naoto Jimi (2024) An undescribed species of Dendronephthya (Cnidaria, Octocorallia) from Kita-Koho Seamount. Annual Meeting of Plankton and Benthos Society of Japan 2024

Newsletter

Bacharo KBB, Bergman LA, Kise H, Sentoku A, Yokooka H, Ohno A, Tsuchida S, Fujiwara Y, Reimer JD. (2024). JAMSTEC KM24-03 (Leg 2) Deep-Sea Cruise: Report on the cnidarians of the Daito Islands, Philippine Sea. Deep Sea Life, 23: 11-12.

Vendetti J (2024) Dispatches from the D-ARK: Follow Curator of Malacology Jann Vendetti with updates from an expedition into the deep sea caves around Japan's Minami-Daito Island. National History Museum Los Angeles County. https://nhm.org/stories/deep-sea-caves-expedition-japan

Exhibitions / Events

JAMSTEC, Enoshima Aquarium (2025) [Live Stream] New Species Discovered! Exploring the Mysterious Deep-Sea Caves "D-ARK". Enoshima Aquarium
JAMSTEC official YouTube chennel／Niconico Live Streaming

Yamaki A, Ito S, Koeda K, Kawato M, Bergman L, Narushima H, Fujiwara Y (2025) Live coverage of underwater drone survey ~ Off the coast of Enoshima ~ Vol.9 D-ARK Special. Enoshima Aquarium (in Japanese)

Fujiwara Y (2025) Special lecture “D-ARK”. Enoshima Aquarium (in Japanese)

Ito S (2025) Underwater drone piloting experience. Enoshima Aquarium (in Japanese)

Enoshima Aquarium (2024–2025) Special exhibition “Enosui Deep-sea exhibition - 200% Deepness-”. Enoshima Aquarium

Enoshima Aquarium (2024) Aquarium exhibit: "Display of deep-sea creatures collected at D-ARK". Enoshima Aquarium

SNS / Mass media

Enosui cruise diary (in Japanese)

D-ARK cruise (1) April 27th: D-ARK departs for unknown waters
D-ARK cruise (2) April 29th: Finally Arrived! Minamidaito Island
D-ARK cruise (3) April 30th and May 1st: Two Underwater Robots Launch!
D-ARK cruise (4) May 2nd, May 3rd Mini ROV, Baited camera, fishing collection, CTD water sampling
D-ARK cruise (5) May 4th, May 5th Endoscopic camera, CTD, Baited camera again
D-ARK cruise (6) May 6th and May 7th Two caves
D-ARK cruise (7) May 8th and May 9th: Enthusiastic fishing expeditions and cave exploration
D-ARK Voyage (8) May 10th and May 11th: Transition: D-ARK's survey for this year ends safely, and we head to the Kyushu-Palau Ridge.

JAMSTEC Official SNS (in Japanese)

  • Ocean shot Project “D-ARK（Deep-sea Archaic Refugia in Karst）” Kicks Off!
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  • D-ARK Press (1) Large deep-sea cave discovered during first cruise!
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  • D-ARK Press (1) Large deep-sea cave discovered during first cruise! video
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  • D-ARK Press (2) New Deep-Sea Exhibit Now Open at Enoshima Aquarium!
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  • D-ARK Press (3) D-ARK’s First New Species! Paper on “Daito-hime-
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  • D-ARK Press (4) “Deep-Sea Exhibition” Now Showing at Enoshima Aquarium!
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  • JAMSTEC × Enoshima Aquarium Live Stream Promo #1
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  • JAMSTEC × Enoshima Aquarium Live Stream Promo #2
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  • D-ARK Press (5) Japan’s First Record! Paper on “Horaanahisui-yasemutsu” Published!
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Darwin’s Amazing Animals Official X “exclusive coverage of the research cruise conducted in the waters around Minamidaito Island” (in Japanese)

Special drama " Darwin’s Amazing Animals is coming!?", August 20, 2024. NHK TV

Award

AORI Director’s Award　“Challenging the Deep-Sea Caves!” (2025) Photo Contest, Ocean and Earth Symposium 2024